* using log directory 'd:/RCompile/CRANincoming/R-devel/clootl.Rcheck'
* using R version 4.5.0 RC (2025-04-03 r88103 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'clootl/DESCRIPTION' ... OK
* this is package 'clootl' version '0.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Eliot Miller <clootlmaintainers@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  McTavish (16:277)
  al (16:289)
  clootl (16:72)
  et (16:286)

Package has a VignetteBuilder field but no prebuilt vignette index.

Found the following (possibly) invalid file URIs:
  URI: examples/intro.md
    From: README.md
  URI: examples/dataDownload.md
    From: README.md
  URI: examples/avonet.md
    From: README.md

Found the following (possibly) invalid DOIs:
  DOI: https://doi.org/10.1101/2024.05.20.595017
    From: DESCRIPTION
    Status: 404
    Message: Not Found

The Description field contains
  (2024) <doi:https://doi.org/10.1101/2024.05.20.595017>.
Please enclose URLs in angle brackets (<...>).
The Description field contains
  (2024) <doi:https://doi.org/10.1101/2024.05.20.595017>.
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Vignette dependency required without any vignettes: 'knitr'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'clootl' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) clootl_data.Rd:47-49: Lost braces
    47 | for (inputs in all_nodes$source_id_map) {
       |                                         ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs