R Under development (unstable) (2026-02-10 r89394 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(clmstan)

Attaching package: 'clmstan'

The following object is masked from 'package:base':

    gamma

> 
> test_check("clmstan")
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Treedepth: OK
  E-BFMI: OK

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Treedepth: OK
  E-BFMI: OK

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
MCMC Diagnostics: All OK
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Treedepth: OK
  E-BFMI: OK

Convergence Diagnostics:
  All Rhat < 1.01 (max: 1.001)
  All ESS > 100 (min bulk: 1900, min tail: 1729)
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 10 (WARNING!)
  Treedepth: OK
  E-BFMI: OK

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Max treedepth: 5 transitions hit limit
  E-BFMI: OK

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Treedepth: OK
  E-BFMI: Low in chain(s) 1, 2 (WARNING!)

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
MCMC Diagnostics: Issues detected
======================================== 

HMC Diagnostics:
  Divergences: 0 (OK)
  Treedepth: OK
  E-BFMI: OK

Convergence Diagnostics:
  Max Rhat: 1.014 (WARNING!)
  Min ESS bulk: 318 (WARNING!)
  Min ESS tail: 320 (WARNING!)

  Problematic parameters:
# A tibble: 4 x 4
  variable          rhat ess_bulk ess_tail
  <chr>            <dbl>    <dbl>    <dbl>
1 beta[2]          0.998      363      320
2 c_transformed[1] 1.01       387      369
3 c_transformed[3] 1.01       318      368
4 beta0            0.997      386      364
[ FAIL 0 | WARN 0 | SKIP 23 | PASS 843 ]

══ Skipped tests (23) ══════════════════════════════════════════════════════════
• On CRAN (18): 'test-clm_stan.R:24:3', 'test-clm_stan.R:47:3',
  'test-clm_stan.R:74:3', 'test-link-sampling.R:50:3',
  'test-link-sampling.R:70:3', 'test-link-sampling.R:90:3',
  'test-link-sampling.R:110:3', 'test-link-sampling.R:130:3',
  'test-link-sampling.R:154:3', 'test-link-sampling.R:180:3',
  'test-link-sampling.R:206:3', 'test-link-sampling.R:233:3',
  'test-link-sampling.R:259:3', 'test-link-sampling.R:285:3',
  'test-link-sampling.R:315:3', 'test-link-sampling.R:342:3',
  'test-link-sampling.R:372:3', 'test-link-sampling.R:393:3'
• empty test (5): 'test-model-consistency.R:60:1',
  'test-model-consistency.R:83:1', 'test-model-consistency.R:106:1',
  'test-model-consistency.R:130:1', 'test-model-consistency.R:161:1'

[ FAIL 0 | WARN 0 | SKIP 23 | PASS 843 ]
> 
> proc.time()
   user  system elapsed 
   9.46    1.12   10.59