* using log directory ‘/srv/hornik/tmp/CRAN/clinfun.Rcheck’
* using R Under development (unstable) (2023-10-11 r85316)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘clinfun/DESCRIPTION’ ... OK
* this is package ‘clinfun’ version ‘1.1.4’
* checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers
Maintainer: ‘Venkatraman E. Seshan <seshanv@mskcc.org>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘clinfun’ can be installed ... [5s/5s] OK
* used C compiler: ‘Debian clang version 16.0.6 (15)’
* used Fortran compiler: ‘GNU Fortran (Debian 13.2.0-4) 13.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) gsdesign.Rd:66: Lost braces
    66 |   the formula n*{1 + sqrt{1+4/{abs(pC-pE)*n}}}^2 where n is the
       |                 ^
checkRd: (-1) gsdesign.Rd:66: Lost braces
    66 |   the formula n*{1 + sqrt{1+4/{abs(pC-pE)*n}}}^2 where n is the
       |                          ^
checkRd: (-1) gsdesign.Rd:66: Lost braces
    66 |   the formula n*{1 + sqrt{1+4/{abs(pC-pE)*n}}}^2 where n is the
       |                               ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Objects in \usage without \alias in Rd file 'clinfun-internal.Rd':
  ‘compareROC.paired’ ‘compareROC.unpaired’ ‘getBoundary’
  ‘gsd.bdryconstant’ ‘gsd.drift.efficacy’ ‘gsd.drift.both’ ‘mrcobj’
  ‘smmrcobj’ ‘rocauc’ ‘smrocauc’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs