* using log directory 'd:/RCompile/CRANincoming/R-devel/cit.Rcheck'
* using R Under development (unstable) (2024-06-27 r86847 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'cit/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cit' version '2.3.2'
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Joshua Millstein <joshua.millstein@usc.edu>'

Reading CITATION file fails with
  argument "bibtype" is missing, with no default
when package is not installed.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cit' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Error in bibentry(entry = "Article", title = "cit: hypothesis testing software for mediation analysis in genomic applications",     author = c(person("Joshua", "Millstein", email = "joshua.millstein@usc.edu"),         person("Gary", "Chen"), person("Carrie", "Breton")),     journal = "Bioinformatics", year = 2016, month = "aug", volume = 32,     issue = 15, doi = "10.1093/bioinformatics/btw135", url = "https://doi.org/10.1093/bioinformatics/btw135",     issn = "1367-4803", textVersion = "Joshua Millstein, Gary K. Chen, Carrie V. Breton, cit: hypothesis testing software for mediation analysis in genomic applications, Bioinformatics, Volume 32, Issue 15, 1 August 2016, Pages 2364-2365, https://doi.org/10.1093/bioinformatics/btw135"): argument "bibtype" is missing, with no default
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'tinytest.R'
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs