downloading reverse dependencies ... downloading actel_1.3.0.tar.gz ... ok downloading AeRobiology_2.0.1.tar.gz ... ok downloading amt_0.3.0.0.tar.gz ... ok downloading ascotraceR_0.0.1.tar.gz ... ok downloading bayes4psy_1.2.13.tar.gz ... ok downloading Bios2cor_2.2.2.tar.gz ... ok downloading bpDir_0.1.2.tar.gz ... ok downloading cercospoRa_0.0.2.tar.gz ... ok downloading CircMLE_0.3.0.tar.gz ... ok downloading CircOutlier_3.2.3.tar.gz ... ok downloading CircSpaceTime_0.9.0.tar.gz ... ok downloading circularEV_0.1.1.tar.gz ... ok downloading cplots_0.5-0.tar.gz ... ok downloading CSHShydRology_1.4.3.tar.gz ... ok downloading cylcop_0.2.0.tar.gz ... ok downloading FLightR_0.5.5.tar.gz ... ok downloading GInSARCorW_1.15.8.tar.gz ... ok downloading GTRT_0.1.0.tar.gz ... ok downloading HDiR_1.1.3.tar.gz ... ok downloading isocir_2.1.tar.gz ... ok downloading KarsTS_2.4.1.tar.gz ... ok downloading kernplus_0.1.2.tar.gz ... ok downloading LaMa_2.0.6.tar.gz ... ok downloading monographaR_1.3.1.tar.gz ... ok downloading movementsync_0.1.5.tar.gz ... ok downloading NPCirc_3.1.1.tar.gz ... ok downloading Ostats_0.2.0.tar.gz ... ok downloading pgKDEsphere_1.0.1.tar.gz ... ok downloading phase_1.2.9.tar.gz ... ok downloading PPTcirc_0.2.3.tar.gz ... ok downloading ridgetorus_1.0.3.tar.gz ... ok downloading samc_4.0.0.tar.gz ... ok downloading sharpshootR_2.3.3.tar.gz ... ok downloading SOPIE_1.6.tar.gz ... ok downloading tectonicr_0.4.7.tar.gz ... ok downloading VoxR_1.0.0.tar.gz ... ok downloading archdata_1.2-1.tar.gz ... ok downloading bcpa_1.3.2.tar.gz ... ok downloading circhelp_1.1.tar.gz ... ok downloading move_4.2.6.tar.gz ... ok downloading move2_0.4.4.tar.gz ... ok downloading picante_1.8.2.tar.gz ... ok downloading powerbrmsINLA_1.0.0.tar.gz ... ok downloading QuadratiK_1.1.3.tar.gz ... ok downloading recurse_1.4.0.tar.gz ... ok installing dependencies ‘adehabitatHR’, ‘amt’, ‘aqp’, ‘BAMBI’, ‘bcpa’, ‘behavr’, ‘Bolstad2’, ‘circular’, ‘clusterRepro’, ‘ctmm’, ‘daymetr’, ‘Directional’, ‘DirStats’, ‘EMbC’, ‘emg’, ‘Evapotranspiration’, ‘ggvis’, ‘GoFKernel’, ‘hydromad’, ‘hypervolume’, ‘INLA’, ‘metRology’, ‘MGBT’, ‘mixR’, ‘move’, ‘move2’, ‘moveHMM’, ‘MSwM’, ‘MVN’, ‘NPCirc’, ‘osfr’, ‘PHSMM’, ‘prettymapr’, ‘prevR’, ‘RInside’, ‘rotasym’, ‘RTMB’, ‘sdetorus’, ‘soilDB’, ‘SoilTaxonomy’, ‘solartime’, ‘sphunif’, ‘stlplus’, ‘suntools’, ‘tidyhydat’, ‘timeSeriesDataSets’, ‘Tinflex’, ‘tseriesChaos’, ‘WaveletComp’, ‘whitebox’, ‘zeitgebr’ Warning: packages ‘hydromad’, ‘INLA’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Gmedian’, ‘lomb’ begin installing package ‘Gmedian’ begin installing package ‘lomb’ begin installing package ‘ggvis’ begin installing package ‘moveHMM’ begin installing package ‘emg’ begin installing package ‘metRology’ begin installing package ‘RInside’ begin installing package ‘tidyhydat’ begin installing package ‘whitebox’ begin installing package ‘MGBT’ begin installing package ‘GoFKernel’ begin installing package ‘mixR’ begin installing package ‘suntools’ begin installing package ‘timeSeriesDataSets’ begin installing package ‘Directional’ begin installing package ‘MVN’ begin installing package ‘tseriesChaos’ begin installing package ‘stlplus’ begin installing package ‘RTMB’ begin installing package ‘PHSMM’ begin installing package ‘MSwM’ begin installing package ‘osfr’ begin installing package ‘WaveletComp’ begin installing package ‘Bolstad2’ begin installing package ‘hypervolume’ begin installing package ‘rotasym’ begin installing package ‘behavr’ begin installing package ‘sdetorus’ * installing *source* package ‘emg’ ... ** this is package ‘emg’ version ‘1.0.9’ ** package ‘emg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emg) begin installing package ‘BAMBI’ * installing *source* package ‘GoFKernel’ ... ** this is package ‘GoFKernel’ version ‘2.1-3’ ** package ‘GoFKernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GoFKernel) begin installing package ‘aqp’ * installing *source* package ‘behavr’ ... ** this is package ‘behavr’ version ‘0.3.3’ ** package ‘behavr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (behavr) begin installing package ‘daymetr’ * installing *source* package ‘timeSeriesDataSets’ ... ** this is package ‘timeSeriesDataSets’ version ‘0.1.0’ ** package ‘timeSeriesDataSets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timeSeriesDataSets) begin installing package ‘Evapotranspiration’ * installing *source* package ‘MGBT’ ... ** this is package ‘MGBT’ version ‘1.0.7’ ** package ‘MGBT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MGBT) begin installing package ‘SoilTaxonomy’ * installing *source* package ‘tseriesChaos’ ... ** this is package ‘tseriesChaos’ version ‘0.1-13.1’ ** package ‘tseriesChaos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptxKhDC/R.INSTALL2d7a5793c0014/tseriesChaos/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C2.c -o C2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c d2.c -o d2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c false.nearest.c -o false.nearest.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_knearests.c -o find_knearests.o find_knearests.c: In function ‘find_knearests’: find_knearests.c:21:9: warning: variable ‘md’ set but not used [-Wunused-but-set-variable] 21 | int i,j,md; | ^~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c follow_points.c -o follow_points.o follow_points.c: In function ‘follow_points’: follow_points.c:22:30: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 22 | int m,d, s, nref, totref, k, length, *ref; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mutual.c -o mutual.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stplot.c -o stplot.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o tseriesChaos.so C2.o d2.o false.nearest.o find_knearests.o follow_points.o misc.o mutual.o search.o stplot.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptxKhDC/R.INSTALL2d7a5793c0014/tseriesChaos/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tseriesChaos/00new/tseriesChaos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tseriesChaos) begin installing package ‘adehabitatHR’ * installing *source* package ‘Bolstad2’ ... ** this is package ‘Bolstad2’ version ‘1.0-29’ ** package ‘Bolstad2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bolstad2) begin installing package ‘bcpa’ * installing *source* package ‘suntools’ ... ** this is package ‘suntools’ version ‘1.0.1’ ** package ‘suntools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading in method for ‘crepuscule’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarnoon’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarpos’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘sunriset’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (suntools) begin installing package ‘solartime’ * installing *source* package ‘tidyhydat’ ... ** this is package ‘tidyhydat’ version ‘0.7.1’ ** package ‘tidyhydat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyhydat) begin installing package ‘move’ * installing *source* package ‘osfr’ ... ** this is package ‘osfr’ version ‘0.2.9’ ** package ‘osfr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (osfr) begin installing package ‘prettymapr’ * installing *source* package ‘daymetr’ ... ** this is package ‘daymetr’ version ‘1.7.1’ ** package ‘daymetr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (daymetr) begin installing package ‘clusterRepro’ * installing *source* package ‘clusterRepro’ ... ** this is package ‘clusterRepro’ version ‘0.9’ ** package ‘clusterRepro’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterRepro) begin installing package ‘Tinflex’ * installing *source* package ‘WaveletComp’ ... ** this is package ‘WaveletComp’ version ‘1.2’ ** package ‘WaveletComp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WaveletComp) begin installing package ‘prevR’ * installing *source* package ‘solartime’ ... ** this is package ‘solartime’ version ‘0.0.4’ ** package ‘solartime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (solartime) begin installing package ‘move2’ * installing *source* package ‘prettymapr’ ... ** this is package ‘prettymapr’ version ‘0.2.5’ ** package ‘prettymapr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettymapr) begin installing package ‘circular’ * installing *source* package ‘SoilTaxonomy’ ... ** this is package ‘SoilTaxonomy’ version ‘0.2.8’ ** package ‘SoilTaxonomy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SoilTaxonomy) begin installing package ‘EMbC’ * installing *source* package ‘MSwM’ ... ** this is package ‘MSwM’ version ‘1.5’ ** package ‘MSwM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MSwM) * installing *source* package ‘lomb’ ... ** this is package ‘lomb’ version ‘2.5.0’ ** package ‘lomb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lomb) begin installing package ‘zeitgebr’ * installing *source* package ‘metRology’ ... ** this is package ‘metRology’ version ‘0.9-29-2’ ** package ‘metRology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metRology) * installing *source* package ‘ggvis’ ... ** this is package ‘ggvis’ version ‘0.4.9’ ** package ‘ggvis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggvis) * installing *source* package ‘Tinflex’ ... ** this is package ‘Tinflex’ version ‘2.4’ ** package ‘Tinflex’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp83RCzy/R.INSTALL2d7f9a7ab00f71/Tinflex/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Tinflex_C.c -o Tinflex_C.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Tinflex_RC.c -o Tinflex_RC.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Tinflex_lib.c -o Tinflex_lib.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Tinflex.so Tinflex_C.o Tinflex_RC.o Tinflex_lib.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp83RCzy/R.INSTALL2d7f9a7ab00f71/Tinflex/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Tinflex/00new/Tinflex/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Tinflex) * installing *source* package ‘zeitgebr’ ... ** this is package ‘zeitgebr’ version ‘0.3.6’ ** package ‘zeitgebr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zeitgebr) * installing *source* package ‘RInside’ ... ** this is package ‘RInside’ version ‘0.2.19’ ** package ‘RInside’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFvtZYg/R.INSTALL2d7a22cf8ab90/RInside/src' /home/hornik/tmp/R-d-gcc-15/bin/Rscript tools/RInsideAutoloads.r > RInsideAutoloads.h /home/hornik/tmp/R-d-gcc-15/bin/Rscript tools/RInsideEnvVars.r > RInsideEnvVars.h g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MemBuf.cpp -o MemBuf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RInside.cpp -o RInside.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RInside_C.cpp -o RInside_C.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compiler.cpp -o compiler.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR g++-15 -std=gnu++17 -o libRInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -shared -Wl,-O1 -L"/home/hornik/tmp/R-d-gcc-15/lib" -lR ar qc libRInside.a MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o cp libRInside.so ../inst/lib cp libRInside.a ../inst/lib rm libRInside.so libRInside.a make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFvtZYg/R.INSTALL2d7a22cf8ab90/RInside/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RInside/00new/RInside/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RInside) * installing *source* package ‘bcpa’ ... ** this is package ‘bcpa’ version ‘1.3.2’ ** package ‘bcpa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEJUvFE/R.INSTALL2d7e296300ec2e/bcpa/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GetL.cpp -o GetL.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o bcpa.so GetL.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEJUvFE/R.INSTALL2d7e296300ec2e/bcpa/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bcpa/00new/bcpa/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcpa) * installing *source* package ‘rotasym’ ... ** this is package ‘rotasym’ version ‘1.2.0’ ** package ‘rotasym’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprEtwsz/R.INSTALL2d7a6e14ffffe5/rotasym/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vMF.cpp -o vMF.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rotasym.so RcppExports.o vMF.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprEtwsz/R.INSTALL2d7a6e14ffffe5/rotasym/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rotasym/00new/rotasym/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotasym) begin installing package ‘DirStats’ begin installing package ‘sphunif’ * installing *source* package ‘Evapotranspiration’ ... ** this is package ‘Evapotranspiration’ version ‘1.16’ ** package ‘Evapotranspiration’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Evapotranspiration) * installing *source* package ‘adehabitatHR’ ... ** this is package ‘adehabitatHR’ version ‘0.4.22’ ** package ‘adehabitatHR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2p0oTr/R.INSTALL2d7e1736fe1662/adehabitatHR/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o adehabitatHR.so init.o tests.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2p0oTr/R.INSTALL2d7e1736fe1662/adehabitatHR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adehabitatHR/00new/adehabitatHR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adehabitatHR) * installing *source* package ‘PHSMM’ ... ** this is package ‘PHSMM’ version ‘1.0’ ** package ‘PHSMM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9mUtC6/R.INSTALL2d7a6443fe80a0/PHSMM/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nll_Rcpp.cpp -o nll_Rcpp.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o PHSMM.so RcppExports.o nll_Rcpp.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9mUtC6/R.INSTALL2d7a6443fe80a0/PHSMM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PHSMM/00new/PHSMM/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PHSMM) * installing *source* package ‘stlplus’ ... ** this is package ‘stlplus’ version ‘0.5.1’ ** package ‘stlplus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE2WoNH/R.INSTALL2d7a5a3cedca54/stlplus/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interp.cpp -o interp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loess.cpp -o loess.o loess.cpp: In function ‘Rcpp::List c_loess(Rcpp::NumericVector, Rcpp::NumericVector, int, int, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector)’: loess.cpp:15:7: warning: variable ‘span2’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:14: warning: variable ‘span3’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ma.cpp -o ma.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o stlplus.so RcppExports.o interp.o loess.o ma.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE2WoNH/R.INSTALL2d7a5a3cedca54/stlplus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stlplus/00new/stlplus/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stlplus) * installing *source* package ‘move2’ ... ** this is package ‘move2’ version ‘0.4.4’ ** package ‘move2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (move2) * installing *source* package ‘MVN’ ... ** this is package ‘MVN’ version ‘6.1’ ** package ‘MVN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MVN) * installing *source* package ‘DirStats’ ... ** this is package ‘DirStats’ version ‘0.1.10’ ** package ‘DirStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2nDs7J/R.INSTALL2d82f15320dbbb/DirStats/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c kde_dir_vmf.f90 -o kde_dir_vmf.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lcv_dir_vmf.f90 -o lcv_dir_vmf.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lscv_dir_vmf.f90 -o lscv_dir_vmf.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c ribesl.f90 -o ribesl.o ribesl.f90:191:23: 191 | CONV(N) = DBLE(N) | 1 Warning: Obsolescent feature: Statement function at (1) ribesl.f90:192:26: 192 | FUNC(X) = DGAMMA2(X) | 1 Warning: Obsolescent feature: Statement function at (1) ribesl.f90:572:23: 572 | CONV(I) = DBLE(I) | 1 Warning: Obsolescent feature: Statement function at (1) gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o DirStats.so init.o kde_dir_vmf.o lcv_dir_vmf.o lscv_dir_vmf.o ribesl.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2nDs7J/R.INSTALL2d82f15320dbbb/DirStats/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DirStats/00new/DirStats/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirStats) * installing *source* package ‘circular’ ... ** this is package ‘circular’ version ‘0.5-2’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOYyfQm/R.INSTALL2d805275ae743f/circular/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance.c -o distance.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dwrappednormal.f -o dwrappednormal.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mean.circular.c -o mean.circular.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c median.circular.c -o median.circular.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c medianHL.circular.c -o medianHL.circular.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c minuspipluspi.c -o minuspipluspi.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mle.wrappednormal.f -o mle.wrappednormal.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rvonmises.c -o rvonmises.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weighted.mean.circular.c -o weighted.mean.circular.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o circular.so distance.o dwrappednormal.o init.o mean.circular.o median.circular.o medianHL.circular.o minuspipluspi.o mle.wrappednormal.o rvonmises.o weighted.mean.circular.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOYyfQm/R.INSTALL2d805275ae743f/circular/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-circular/00new/circular/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (circular) begin installing package ‘NPCirc’ * installing *source* package ‘mixR’ ... ** this is package ‘mixR’ version ‘0.2.1’ ** package ‘mixR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbnDgc1/R.INSTALL2d7a2d2e9e561e/mixR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mixCpp.cpp -o mixCpp.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/functions.h:54, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/sugar.h:31, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:79, from mixCpp.cpp:1: In member function ‘double Rcpp::sugar::Pow::operator[](R_xlen_t) const [with int RTYPE = 14; bool NA = true; T = Rcpp::Vector<14, Rcpp::PreserveStorage>; EXPONENT_TYPE = double]’, inlined from ‘double Rcpp::sugar::Times_Vector_Vector<14, LHS_NA, LHS_T, RHS_NA, RHS_T>::operator[](R_xlen_t) const [with bool LHS_NA = true; LHS_T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >; bool RHS_NA = true; RHS_T = Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double>]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/operators/times.h:71:23, inlined from ‘double Rcpp::sugar::Sum<14, NA, T>::get() const [with bool NA = true; T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> >]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/sum.h:65:22, inlined from ‘Rcpp::sugar::Lazy::operator T() const [with T = double; EXPR = Rcpp::sugar::Sum<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> > >]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/Lazy.h:31:72, inlined from ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’ at mixCpp.cpp:867:16: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/pow.h:36:25: warning: ‘r_new’ may be used uninitialized [-Wmaybe-uninitialized] 36 | return ::pow( object[i], op ); | ~~~~~^~~~~~~~~~~~~~~~~ mixCpp.cpp: In function ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’: mixCpp.cpp:860:30: note: ‘r_new’ was declared here 860 | double theta, lambda, k, r_new; | ^~~~~ mixCpp.cpp: In function ‘Rcpp::NumericVector newton_gamma_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’: mixCpp.cpp:536:12: warning: ‘alpha_new’ may be used uninitialized [-Wmaybe-uninitialized] 536 | lambda = alpha_new / delta; | ~~~~~~~^~~~~~~~~~~~~~~~~~~ mixCpp.cpp:528:12: note: ‘alpha_new’ was declared here 528 | double alpha_new, lambda; | ^~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mixR.so RcppExports.o mixCpp.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbnDgc1/R.INSTALL2d7a2d2e9e561e/mixR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixR/00new/mixR/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixR) * installing *source* package ‘whitebox’ ... ** this is package ‘whitebox’ version ‘2.4.0’ ** package ‘whitebox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whitebox) * installing *source* package ‘prevR’ ... ** this is package ‘prevR’ version ‘5.0.0’ ** package ‘prevR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prevR) * installing *source* package ‘aqp’ ... ** this is package ‘aqp’ version ‘2.2-1’ ** package ‘aqp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"SoilProfileCollection","tbl_df"’: no definition for class “tbl_df” in method for ‘coerce’ with signature ‘"SoilProfileCollection","SpatialPointsDataFrame"’: no definition for class “SpatialPointsDataFrame” in method for ‘coerce’ with signature ‘"SoilProfileCollection","sf"’: no definition for class “sf” in method for ‘coerce’ with signature ‘"SoilProfileCollection","SpatialPoints"’: no definition for class “SpatialPoints” Creating a generic function for ‘nrow’ from package ‘base’ in package ‘aqp’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aqp) begin installing package ‘soilDB’ * installing *source* package ‘Directional’ ... ** this is package ‘Directional’ version ‘7.2’ ** package ‘Directional’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Directional) * installing *source* package ‘EMbC’ ... ** this is package ‘EMbC’ version ‘2.0.4’ ** package ‘EMbC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppV0WA2/R.INSTALL2d80981c9b8323/EMbC/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvbc.cpp -o mvbc.o mvbc.cpp: In function ‘Rcpp::NumericVector getClusters_cpp(arma::mat, arma::mat, arma::mat, arma::mat)’: mvbc.cpp:58:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 58 | for (int k=0; k::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 29 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo:518, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from densities.h:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ densities.h: In function ‘arma::colvec dweibull_rcpp(Rcpp::NumericVector, double, double)’: densities.h:53:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 53 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ densities.h: In function ‘arma::colvec dlnorm_rcpp(Rcpp::NumericVector, double, double)’: densities.h:77:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 77 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ densities.h: In function ‘arma::colvec dexp_rcpp(Rcpp::NumericVector, double, double)’: densities.h:101:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 101 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ densities.h: In function ‘arma::colvec dvm_rcpp(Rcpp::NumericVector, double, double)’: densities.h:132:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 132 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ densities.h: In function ‘arma::colvec dwrpcauchy_rcpp(Rcpp::NumericVector, double, double)’: densities.h:158:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 158 | if(!arma::is_finite(x(i))) | ~~~~~~~~~~~~~~~^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ nLogLike.cpp: In function ‘double nLogLike_rcpp(int, arma::mat, arma::mat, Rcpp::DataFrame, std::string, std::string, arma::mat, arma::mat, arma::rowvec, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector)’: nLogLike.cpp:143:36: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 143 | if(!arma::is_finite(step(i))) { | ~~~~~~~~~~~~~~~^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only::result* junk = nullptr) | ^~~~~~~~~ nLogLike.cpp:187:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 187 | for(int i=0 ; i= 3.0.0), stats Imports: boot, mvtnorm Timings: user system elapsed circular 69.329 5.914 197.094 Results: Check status summary: ERROR WARNING NOTE OK Source packages 0 0 1 0 Reverse depends 1 2 5 37 Check results summary: circular ... NOTE * checking CRAN incoming feasibility ... [7s/128s] NOTE rdepends_actel ... OK rdepends_AeRobiology ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_amt ... OK rdepends_archdata ... OK rdepends_ascotraceR ... OK rdepends_bayes4psy ... OK rdepends_bcpa ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_Bios2cor ... OK rdepends_bpDir ... OK rdepends_cercospoRa ... OK rdepends_circhelp ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_CircMLE ... OK rdepends_CircOutlier ... OK rdepends_CircSpaceTime ... WARNING * checking whether package ‘CircSpaceTime’ can be installed ... [85s/86s] WARNING * checking C++ specification ... NOTE rdepends_circularEV ... OK rdepends_cplots ... OK rdepends_CSHShydRology ... OK rdepends_cylcop ... ERROR * checking Rd files ... [5s/6s] NOTE * checking Rd cross-references ... NOTE * checking examples ... [10s/10s] ERROR rdepends_FLightR ... OK rdepends_GInSARCorW ... OK rdepends_GTRT ... OK rdepends_HDiR ... OK rdepends_isocir ... OK rdepends_KarsTS ... OK rdepends_kernplus ... OK rdepends_LaMa ... OK rdepends_monographaR ... OK rdepends_move ... OK rdepends_move2 ... OK rdepends_movementsync ... OK rdepends_NPCirc ... WARNING * checking whether package ‘NPCirc’ can be installed ... [49s/49s] WARNING * checking C++ specification ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_Ostats ... OK rdepends_pgKDEsphere ... OK rdepends_phase ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_picante ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_powerbrmsINLA ... OK rdepends_PPTcirc ... OK rdepends_QuadratiK ... OK rdepends_recurse ... OK rdepends_ridgetorus ... OK rdepends_samc ... OK rdepends_sharpshootR ... OK rdepends_SOPIE ... OK rdepends_tectonicr ... OK rdepends_VoxR ... OK Check results changes: Package: AeRobiology Check: CRAN incoming feasibility Old result: NOTE Package: archdata Check: CRAN incoming feasibility Old result: NOTE Package: bcpa Check: CRAN incoming feasibility Old result: NOTE Package: bpDir Check: CRAN incoming feasibility Old result: NOTE Package: CircMLE Check: CRAN incoming feasibility Old result: NOTE Package: CircOutlier Check: CRAN incoming feasibility Old result: NOTE Package: CircSpaceTime Check: CRAN incoming feasibility Old result: NOTE Package: circularEV Check: CRAN incoming feasibility Old result: NOTE Package: GInSARCorW Check: CRAN incoming feasibility Old result: NOTE Package: monographaR Check: CRAN incoming feasibility Old result: NOTE Package: NPCirc Check: CRAN incoming feasibility Old result: NOTE Package: picante Check: CRAN incoming feasibility Old result: NOTE Package: PPTcirc Check: CRAN incoming feasibility Old result: NOTE Package: SOPIE Check: CRAN incoming feasibility Old result: NOTE