downloading reverse dependencies ... downloading actel_1.3.0.tar.gz ... ok downloading AeRobiology_2.0.1.tar.gz ... ok downloading amt_0.2.2.0.tar.gz ... ok downloading ascotraceR_0.0.1.tar.gz ... ok downloading bayes4psy_1.2.12.tar.gz ... ok downloading bpDir_0.1.2.tar.gz ... ok downloading CircMLE_0.3.0.tar.gz ... ok downloading CircOutlier_3.2.3.tar.gz ... ok downloading CircSpaceTime_0.9.0.tar.gz ... ok downloading circularEV_0.1.1.tar.gz ... ok downloading cplots_0.5-0.tar.gz ... ok downloading CSHShydRology_1.4.2.tar.gz ... ok downloading cylcop_0.2.0.tar.gz ... ok downloading FLightR_0.5.5.tar.gz ... ok downloading GInSARCorW_1.15.8.tar.gz ... ok downloading HDiR_1.1.3.tar.gz ... ok downloading isocir_2.0-7.1.tar.gz ... ok downloading KarsTS_2.4.1.tar.gz ... ok downloading kernplus_0.1.2.tar.gz ... ok downloading monographaR_1.3.1.tar.gz ... ok downloading movementsync_0.1.4.tar.gz ... ok downloading NPCirc_3.1.1.tar.gz ... ok downloading Ostats_0.2.0.tar.gz ... ok downloading pgKDEsphere_1.0.1.tar.gz ... ok downloading phase_1.2.9.tar.gz ... ok downloading PPTcirc_0.2.3.tar.gz ... ok downloading ridgetorus_1.0.2.tar.gz ... ok downloading samc_3.3.0.tar.gz ... ok downloading sharpshootR_2.3.1.tar.gz ... ok downloading SOPIE_1.6.tar.gz ... ok downloading tectonicr_0.4.0.tar.gz ... ok downloading VoxR_1.0.0.tar.gz ... ok downloading archdata_1.2-1.tar.gz ... ok downloading bcpa_1.3.2.tar.gz ... ok downloading circhelp_1.1.tar.gz ... ok downloading move_4.2.4.tar.gz ... ok downloading move2_0.3.0.tar.gz ... ok downloading picante_1.8.2.tar.gz ... ok downloading recurse_1.4.0.tar.gz ... ok installing dependencies ‘adehabitatHR’, ‘amt’, ‘aqp’, ‘BAMBI’, ‘bcpa’, ‘behavr’, ‘Bolstad2’, ‘circular’, ‘ctmm’, ‘daymetr’, ‘Directional’, ‘DirStats’, ‘EMbC’, ‘emg’, ‘Evapotranspiration’, ‘fasttime’, ‘ggvis’, ‘GoFKernel’, ‘hydromad’, ‘hypervolume’, ‘lutz’, ‘metRology’, ‘mixR’, ‘move’, ‘move2’, ‘moveHMM’, ‘MVN’, ‘nonlinearTseries’, ‘NPCirc’, ‘osfr’, ‘prettymapr’, ‘prevR’, ‘RInside’, ‘rotasym’, ‘sdetorus’, ‘smoothr’, ‘soilDB’, ‘SoilTaxonomy’, ‘solartime’, ‘sphunif’, ‘stlplus’, ‘suntools’, ‘tidyhydat’, ‘tseriesChaos’, ‘WaveletComp’, ‘whitebox’, ‘zeitgebr’ Warning: package ‘hydromad’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Gmedian’, ‘lomb’ begin installing package ‘Gmedian’ begin installing package ‘lomb’ begin installing package ‘fasttime’ begin installing package ‘ggvis’ begin installing package ‘moveHMM’ begin installing package ‘lutz’ begin installing package ‘emg’ begin installing package ‘metRology’ begin installing package ‘RInside’ begin installing package ‘tidyhydat’ begin installing package ‘whitebox’ begin installing package ‘GoFKernel’ begin installing package ‘mixR’ begin installing package ‘suntools’ begin installing package ‘Directional’ begin installing package ‘MVN’ begin installing package ‘tseriesChaos’ begin installing package ‘stlplus’ begin installing package ‘nonlinearTseries’ begin installing package ‘osfr’ begin installing package ‘WaveletComp’ begin installing package ‘Bolstad2’ begin installing package ‘hypervolume’ begin installing package ‘rotasym’ begin installing package ‘behavr’ begin installing package ‘sdetorus’ begin installing package ‘BAMBI’ begin installing package ‘aqp’ * installing *source* package ‘fasttime’ ... ** package ‘fasttime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz7RgMG/R.INSTALL3877352fa0ff08/fasttime/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tparse.c -o tparse.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o fasttime.so tparse.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz7RgMG/R.INSTALL3877352fa0ff08/fasttime/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fasttime/00new/fasttime/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fasttime) begin installing package ‘daymetr’ * installing *source* package ‘emg’ ... ** package ‘emg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emg) begin installing package ‘Evapotranspiration’ * installing *source* package ‘GoFKernel’ ... ** package ‘GoFKernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GoFKernel) begin installing package ‘SoilTaxonomy’ * installing *source* package ‘behavr’ ... ** package ‘behavr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (behavr) begin installing package ‘smoothr’ * installing *source* package ‘tseriesChaos’ ... ** package ‘tseriesChaos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpasrbS2/R.INSTALL38776d3996b42a/tseriesChaos/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C2.c -o C2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c d2.c -o d2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c false.nearest.c -o false.nearest.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_knearests.c -o find_knearests.o find_knearests.c: In function ‘find_knearests’: find_knearests.c:21:9: warning: variable ‘md’ set but not used [-Wunused-but-set-variable] 21 | int i,j,md; | ^~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c follow_points.c -o follow_points.o follow_points.c: In function ‘follow_points’: follow_points.c:22:30: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 22 | int m,d, s, nref, totref, k, length, *ref; | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mutual.c -o mutual.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c search.c -o search.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stplot.c -o stplot.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o tseriesChaos.so C2.o d2.o false.nearest.o find_knearests.o follow_points.o misc.o mutual.o search.o stplot.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpasrbS2/R.INSTALL38776d3996b42a/tseriesChaos/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tseriesChaos/00new/tseriesChaos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tseriesChaos) begin installing package ‘adehabitatHR’ * installing *source* package ‘daymetr’ ... ** package ‘daymetr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (daymetr) begin installing package ‘bcpa’ * installing *source* package ‘Bolstad2’ ... ** package ‘Bolstad2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bolstad2) begin installing package ‘solartime’ * installing *source* package ‘suntools’ ... ** package ‘suntools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading in method for ‘crepuscule’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarnoon’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘solarpos’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” in method for ‘sunriset’ with signature ‘crds="SpatialPoints",dateTime="POSIXct"’: no definition for class “SpatialPoints” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (suntools) begin installing package ‘move’ * installing *source* package ‘osfr’ ... ** package ‘osfr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (osfr) begin installing package ‘prettymapr’ * installing *source* package ‘MVN’ ... ** package ‘MVN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MVN) begin installing package ‘prevR’ * installing *source* package ‘solartime’ ... ** package ‘solartime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (solartime) begin installing package ‘move2’ * installing *source* package ‘SoilTaxonomy’ ... ** package ‘SoilTaxonomy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SoilTaxonomy) begin installing package ‘circular’ * installing *source* package ‘prettymapr’ ... ** package ‘prettymapr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettymapr) begin installing package ‘EMbC’ * installing *source* package ‘WaveletComp’ ... ** package ‘WaveletComp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WaveletComp) * installing *source* package ‘lomb’ ... ** package ‘lomb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lomb) begin installing package ‘zeitgebr’ * installing *source* package ‘tidyhydat’ ... ** package ‘tidyhydat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyhydat) * installing *source* package ‘metRology’ ... ** package ‘metRology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metRology) * installing *source* package ‘ggvis’ ... ** package ‘ggvis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggvis) * installing *source* package ‘zeitgebr’ ... ** package ‘zeitgebr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zeitgebr) * installing *source* package ‘Evapotranspiration’ ... ** package ‘Evapotranspiration’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Evapotranspiration) * installing *source* package ‘bcpa’ ... ** package ‘bcpa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFmvsAn/R.INSTALL387afe31954e4d/bcpa/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GetL.cpp -o GetL.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bcpa.so GetL.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFmvsAn/R.INSTALL387afe31954e4d/bcpa/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bcpa/00new/bcpa/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcpa) * installing *source* package ‘RInside’ ... ** package ‘RInside’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbB1TLT/R.INSTALL387763656add0d/RInside/src' /home/hornik/tmp/R-d-gcc-14/bin/Rscript tools/RInsideAutoloads.r > RInsideAutoloads.h /home/hornik/tmp/R-d-gcc-14/bin/Rscript tools/RInsideEnvVars.r > RInsideEnvVars.h g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MemBuf.cpp -o MemBuf.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RInside.cpp -o RInside.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RInside_C.cpp -o RInside_C.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compiler.cpp -o compiler.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o RInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR g++-14 -std=gnu++17 -o libRInside.so MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o -shared -Wl,-O1 -L"/home/hornik/tmp/R-d-gcc-14/lib" -lR ar qc libRInside.a MemBuf.o RInside.o RInside_C.o RcppExports.o compiler.o cp libRInside.so ../inst/lib cp libRInside.a ../inst/lib rm libRInside.so libRInside.a make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbB1TLT/R.INSTALL387763656add0d/RInside/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RInside/00new/RInside/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RInside) * installing *source* package ‘rotasym’ ... ** package ‘rotasym’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEKhuJ1/R.INSTALL3877815c5eb4ed/rotasym/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vMF.cpp -o vMF.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rotasym.so RcppExports.o vMF.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEKhuJ1/R.INSTALL3877815c5eb4ed/rotasym/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rotasym/00new/rotasym/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotasym) begin installing package ‘DirStats’ begin installing package ‘sphunif’ * installing *source* package ‘adehabitatHR’ ... ** package ‘adehabitatHR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6OlFlo/R.INSTALL387ad42686b772/adehabitatHR/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o adehabitatHR.so init.o tests.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6OlFlo/R.INSTALL387ad42686b772/adehabitatHR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adehabitatHR/00new/adehabitatHR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adehabitatHR) * installing *source* package ‘circular’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjMZvjP/R.INSTALL387c8539d305a9/circular/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distance.c -o distance.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dwrappednormal.f -o dwrappednormal.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mean.circular.c -o mean.circular.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c median.circular.c -o median.circular.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c medianHL.circular.c -o medianHL.circular.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c minuspipluspi.c -o minuspipluspi.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c mle.wrappednormal.f -o mle.wrappednormal.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rvonmises.c -o rvonmises.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weighted.mean.circular.c -o weighted.mean.circular.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o circular.so distance.o dwrappednormal.o init.o mean.circular.o median.circular.o medianHL.circular.o minuspipluspi.o mle.wrappednormal.o rvonmises.o weighted.mean.circular.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjMZvjP/R.INSTALL387c8539d305a9/circular/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-circular/00new/circular/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (circular) begin installing package ‘NPCirc’ * installing *source* package ‘move2’ ... ** package ‘move2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (move2) * installing *source* package ‘lutz’ ... ** package ‘lutz’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoxrNmV/R.INSTALL38775940ae22eb/lutz/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tz.cpp -o tz.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o lutz.so RcppExports.o tz.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoxrNmV/R.INSTALL38775940ae22eb/lutz/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lutz/00new/lutz/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lutz) * installing *source* package ‘DirStats’ ... ** package ‘DirStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvV26iG/R.INSTALL387eed35036e77/DirStats/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c kde_dir_vmf.f90 -o kde_dir_vmf.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c lcv_dir_vmf.f90 -o lcv_dir_vmf.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c lscv_dir_vmf.f90 -o lscv_dir_vmf.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c ribesl.f90 -o ribesl.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o DirStats.so init.o kde_dir_vmf.o lcv_dir_vmf.o lscv_dir_vmf.o ribesl.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvV26iG/R.INSTALL387eed35036e77/DirStats/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DirStats/00new/DirStats/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirStats) * installing *source* package ‘stlplus’ ... ** package ‘stlplus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphT3gXd/R.INSTALL38777c1bade6f8/stlplus/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interp.cpp -o interp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loess.cpp -o loess.o loess.cpp: In function ‘Rcpp::List c_loess(Rcpp::NumericVector, Rcpp::NumericVector, int, int, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector)’: loess.cpp:15:7: warning: variable ‘span2’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:14: warning: variable ‘span3’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~ loess.cpp:15:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 15 | int span2, span3, offset; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ma.cpp -o ma.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o stlplus.so RcppExports.o interp.o loess.o ma.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphT3gXd/R.INSTALL38777c1bade6f8/stlplus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stlplus/00new/stlplus/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stlplus) * installing *source* package ‘whitebox’ ... ** package ‘whitebox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whitebox) * installing *source* package ‘prevR’ ... ** package ‘prevR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prevR) * installing *source* package ‘smoothr’ ... ** package ‘smoothr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smoothr) * installing *source* package ‘mixR’ ... ** package ‘mixR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQOOHFU/R.INSTALL38775b4d4306fc/mixR/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mixCpp.cpp -o mixCpp.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/functions.h:54, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/sugar.h:31, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:78, from mixCpp.cpp:1: In member function ‘double Rcpp::sugar::Pow::operator[](R_xlen_t) const [with int RTYPE = 14; bool NA = true; T = Rcpp::Vector<14, Rcpp::PreserveStorage>; EXPONENT_TYPE = double]’, inlined from ‘double Rcpp::sugar::Times_Vector_Vector<14, LHS_NA, LHS_T, RHS_NA, RHS_T>::operator[](R_xlen_t) const [with bool LHS_NA = true; LHS_T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >; bool RHS_NA = true; RHS_T = Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double>]’ at /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/operators/times.h:71:23, inlined from ‘double Rcpp::sugar::Sum<14, NA, T>::get() const [with bool NA = true; T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> >]’ at /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/sum.h:65:22, inlined from ‘Rcpp::sugar::Lazy::operator T() const [with T = double; EXPR = Rcpp::sugar::Sum<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> > >]’ at /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/Lazy.h:31:72, inlined from ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’ at mixCpp.cpp:867:54: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/sugar/functions/pow.h:36:25: warning: ‘r_new’ may be used uninitialized [-Wmaybe-uninitialized] 36 | return ::pow( object[i], op ); | ~~~~~^~~~~~~~~~~~~~~~~ mixCpp.cpp: In function ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’: mixCpp.cpp:860:30: note: ‘r_new’ was declared here 860 | double theta, lambda, k, r_new; | ^~~~~ mixCpp.cpp: In function ‘Rcpp::NumericVector newton_gamma_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’: mixCpp.cpp:536:12: warning: ‘alpha_new’ may be used uninitialized [-Wmaybe-uninitialized] 536 | lambda = alpha_new / delta; | ~~~~~~~^~~~~~~~~~~~~~~~~~~ mixCpp.cpp:528:12: note: ‘alpha_new’ was declared here 528 | double alpha_new, lambda; | ^~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mixR.so RcppExports.o mixCpp.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQOOHFU/R.INSTALL38775b4d4306fc/mixR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixR/00new/mixR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixR) * installing *source* package ‘aqp’ ... ** package ‘aqp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"SoilProfileCollection","tbl_df"’: no definition for class “tbl_df” in method for ‘coerce’ with signature ‘"SoilProfileCollection","sf"’: no definition for class “sf” Creating a generic function for ‘nrow’ from package ‘base’ in package ‘aqp’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aqp) begin installing package ‘soilDB’ * installing *source* package ‘EMbC’ ... ** package ‘EMbC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVMbydJ/R.INSTALL387c9b3ad48065/EMbC/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mvbc.cpp -o mvbc.o mvbc.cpp: In function ‘Rcpp::NumericVector getClusters_cpp(arma::mat, arma::mat, arma::mat, arma::mat)’: mvbc.cpp:58:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 58 | for (int k=0; k= 3.0.0), stats Imports: boot, mvtnorm Timings: user system elapsed circular 82.626 5.27 91.589 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 14 25 Check results summary: circular ... OK rdepends_actel ... OK rdepends_AeRobiology ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_amt ... OK rdepends_archdata ... OK rdepends_ascotraceR ... OK rdepends_bayes4psy ... OK rdepends_bcpa ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_bpDir ... OK rdepends_circhelp ... OK rdepends_CircMLE ... NOTE * checking LazyData ... NOTE rdepends_CircOutlier ... OK rdepends_CircSpaceTime ... NOTE * checking C++ specification ... NOTE rdepends_circularEV ... OK rdepends_cplots ... OK rdepends_CSHShydRology ... OK rdepends_cylcop ... NOTE * checking Rd files ... [5s/5s] NOTE * checking Rd cross-references ... NOTE rdepends_FLightR ... OK rdepends_GInSARCorW ... OK rdepends_HDiR ... OK rdepends_isocir ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_KarsTS ... OK rdepends_kernplus ... OK rdepends_monographaR ... OK rdepends_move ... NOTE * checking Rd files ... [1s/1s] NOTE * checking Rd cross-references ... NOTE rdepends_move2 ... OK rdepends_movementsync ... NOTE * checking Rd cross-references ... NOTE rdepends_NPCirc ... NOTE * checking C++ specification ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_Ostats ... OK rdepends_pgKDEsphere ... OK rdepends_phase ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_picante ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_PPTcirc ... OK rdepends_recurse ... OK rdepends_ridgetorus ... NOTE * checking Rd cross-references ... NOTE rdepends_samc ... OK rdepends_sharpshootR ... NOTE * checking package dependencies ... NOTE * checking Rd cross-references ... NOTE rdepends_SOPIE ... OK rdepends_tectonicr ... OK rdepends_VoxR ... NOTE * checking LazyData ... NOTE Warning in normalizePath(dir) : path[1]="/home/hornik/tmp/CRAN": No such file or directory Calls: -> normalizePath Warning in normalizePath(dir) : path[1]="/home/hornik/tmp/CRAN": No such file or directory Calls: -> R_check_outdirs -> normalizePath