* using log directory 'd:/RCompile/CRANincoming/R-devel/cifti.Rcheck' * using R Under development (unstable) (2026-01-10 r89298 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'cifti/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cifti' version '0.5.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'cifti' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [24s] ERROR Error(s) in re-building vignettes: --- re-building 'cifti_work.Rmd' using rmarkdown Quitting from cifti_work.Rmd:94-121 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `rgl.texts()`: ! 'rgl.texts' is defunct. Use 'text3d' instead. See help("Defunct") --- Backtrace: ▆ 1. └─rgl::rgl.texts(x = left_text, text = "Left") 2. └─base::.Defunct("text3d") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cifti_work.Rmd' failed with diagnostics: 'rgl.texts' is defunct. Use 'text3d' instead. See help("Defunct") --- failed re-building 'cifti_work.Rmd' --- re-building 'test_dims_MSC.Rmd' using rmarkdown trying URL 'https://www.nitrc.org/frs/download.php/8541' Content type 'application/force-download' length 28371204 bytes (27.1 MB) ================================================== downloaded 27.1 MB trying URL 'https://s3.amazonaws.com/openneuro/ds000224/ds000224_R1.0.2/uncompressed/derivatives/surface_pipeline/sub-MSC01/processed_restingstate_timecourses/ses-func01/cifti/sub-MSC01_ses-func01_task-rest_bold_32k_fsLR.dtseries.nii' Content type 'binary/octet-stream' length 215994464 bytes (206.0 MB) ================================================== downloaded 206.0 MB Quitting from test_dims_MSC.Rmd:46-67 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `read_xml()`: ! `x` must be a single string, not a character `NA`. --- Backtrace: ▆ 1. └─cifti::read_cifti(mscfile, trans_data = FALSE) 2. └─cifti::get_cifti_type(fname, verbose = verbose) 3. └─base::lapply(...) 4. └─cifti (local) FUN(X[[i]], ...) 5. ├─base::do.call(run_func, args = args) 6. └─cifti (local) ``(...) 7. └─cifti::matrix_ind_map_nodes(fname) 8. └─cifti::cifti_xml(fname) 9. ├─xml2::read_xml(xmldata) 10. └─xml2:::read_xml.character(x = xmldata) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'test_dims_MSC.Rmd' failed with diagnostics: `x` must be a single string, not a character `NA`. --- failed re-building 'test_dims_MSC.Rmd' SUMMARY: processing the following files failed: 'cifti_work.Rmd' 'test_dims_MSC.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR