check_wb <- function() { if (is.null(ciftiTools.getOption("wb_path"))) { skip("Connectome Workbench is not available.") } } test_that("plot_xifti_surface and related functions are working", { check_wb() plot2 <- function(...){plot(...); rgl::close3d()} fnames <- ciftiTools.files() for (cii_fname in fnames$cifti) { cii <- readcii(cii_fname, brainstructures=c("left", "right")) print(cii$meta$cifti$intent) plot2(cii) print("sequential") plot2(cii, color_mode="sequential") plot2(cii, color_mode="sequential", zlim=c(2, 5), title="", widget=FALSE) plot2(cii, color_mode="sequential", zlim=c(5, 2), surfR="very inflated", surfL="very inflated") print("diverging") plot2(cii, color_mode="diverging") #plot2(cii, color_mode="diverging", zlim=c(2, 5)) plot2(cii, color_mode="diverging", zlim=c(5, 2), scientific=TRUE) #plot2(cii, color_mode="diverging", zlim=c(2, 3, 5)) plot2(cii, color_mode="diverging", zlim=c(5, 3, 2), surfL="midthickness", surfR="midthickness") print("qualitative") if (!is.null(cii$meta$cifti$intent) && cii$meta$cifti$intent != 3007) { cii$data$cortex_left[] <- round(cii$data$cortex_left*5) cii$data$cortex_right[] <- round(cii$data$cortex_right*5) plot2(cii, color_mode="qualitative") plot2(cii, color_mode="qualitative", zlim=3) #plot2(cii, color_mode="qualitative", zlim=30) cii <- convert_xifti(cii, "dlabel") plot2(cii) } cii <- readcii(cii_fname, brainstructures=c("left"), resamp_res=2000) plot2(cii, hemisphere="both") testthat::expect_warning( # warning printed, even though they do match plot2(cii, surfR=ciftiTools.files()$surf["right"], hemisphere="both") ) testthat::expect_warning( plot2(cii, surfR="very inflated", hemisphere="both") ) } plot2(read_surf(ciftiTools.files()$surf["left"])) plot2(load_surf(name="midthickness")) testthat::expect_warning( plot2(as.xifti(surfR=make_surf(ciftiTools.files()$surf["right"])), hemisphere="both", title="My Awesome Surfs") ) })