* using log directory ‘/srv/hornik/tmp/CRAN/chouca.Rcheck’
* using R Under development (unstable) (2023-12-17 r85691)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (2)
    Debian flang-new version 17.0.6 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘chouca/DESCRIPTION’ ... OK
* this is package ‘chouca’ version ‘0.0.99’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Alexandre Genin <a.a.h.genin@uu.nl>’

New submission

Possibly misspelled words in DESCRIPTION:
  Genin (11:4)
  al (11:13)
  automata (9:48)
  backends (10:72)
  et (11:10)

Found the following (possibly) invalid file URIs:
  URI: chouca_sca_example.png
    From: inst/doc/chouca-package.html
  URI: chouca_landscape_plotting_example.png
    From: inst/doc/chouca-package.html
  URI: chouca_trace_plotting_example.png
    From: inst/doc/chouca-package.html

The Title field should be in title case. Current version is:
‘A stochastic cellular automaton engine’
In title case that is:
‘A Stochastic Cellular Automaton Engine’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘chouca’ can be installed ... [21s/21s] OK
* used C++ compiler: ‘Debian clang version 17.0.6 (2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    ‘Alexandre Genin [aut, cre]’
  Authors@R: ‘Alexandre Génin [aut, cre] (<https://orcid.org/0000-0002-3333-1338>)’

Maintainer field differs from that derived from Authors@R
  Maintainer: ‘Alexandre Genin <a.a.h.genin@uu.nl>’
  Authors@R:  ‘Alexandre Génin <a.a.h.genin@uu.nl>’

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) trace_plotter.Rd:90-101: Lost braces
    90 | if ( requireNamespace("spatialwarnings") ) {
       |                                            ^
checkRd: (-1) trace_plotter.Rd:93-96: Lost braces
    93 |   moran <- function(mat) {
       |                          ^
checkRd: (-1) trace_plotter.Rd:104-115: Lost braces
   104 | if ( requireNamespace("spatialwarnings") ) {
       |                                            ^
checkRd: (-1) trace_plotter.Rd:107-110: Lost braces
   107 |   pair_counts <- function(mat) {
       |                                ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [189s/192s] OK
  Running ‘testthat.R’ [188s/192s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [21s/21s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs