# ext01 functions ---- test_that("ext01 functions with default argument value return expected result with test data", { pre_data <- ext01_pre(syn_data) raw_res <- ext01_main(pre_data) res <- ext01_post(raw_res) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("ext01 functions with categorical data return expected result with test data", { skip_on_os("windows") proc_data <- dunlin::log_filter(syn_data, PARAMCD == "TDOSE", "adex") pre_data <- ext01_pre(proc_data) raw_res <- ext01_main(pre_data, summaryvars = c("AVAL", "AVALCAT1")) res <- ext01_post(raw_res) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) # ext01 ---- test_that("ext01 works", { skip_on_os("windows") proc_data <- syn_data res1 <- expect_silent(run(ext01, proc_data)) expect_snapshot(cat(export_as_txt(res1, lpp = 100))) res2 <- expect_silent(run(ext01, proc_data, prune_0 = FALSE)) expect_snapshot(cat(export_as_txt(res2, lpp = 100))) }) # ext01 with categorical variables functions ---- test_that("ext01 works for selected parameters and categorical variables", { skip_on_os("windows") proc_data <- syn_data proc_data$adex <- proc_data$adex %>% filter(PARAMCD == "TDOSE") res <- run(ext01, proc_data, prune_0 = TRUE, summaryvars = c("AVAL", "AVALCAT1")) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) # ext01 with custom mapping test_that("ext01 works with custom mapping order", { skip_on_os("windows") map <- data.frame( PARAMCD = "TDURD", AVALCAT1 = c("< 1 month", "3 to <6 months", "1 to <3 months", ">=6 months") ) res <- run(ext01, syn_data, prune_0 = FALSE, summaryvars = c("AVAL", "AVALCAT1"), map = map) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("ext01 works with custom mapping order for a single split", { map <- data.frame( PARCAT2 = "Drug A", PARAMCD = "TDURD", AVALCAT1 = c("< 1 month", "3 to <6 months", "1 to <3 months", ">=6 months") ) res <- run(ext01, syn_data, prune_0 = FALSE, summaryvars = c("AVAL", "AVALCAT1"), map = map) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("ext01 works with custom mapping fill in value", { skip_on_os("windows") map <- data.frame( PARAMCD = "TDURD", AVALCAT1 = c("< 1 month", "3 to <6 months", "1 to <3 months", ">=6 months", "> 12 months") ) proc_data <- syn_data levels(proc_data$adex$AVALCAT1) <- c(levels(proc_data$adex$AVALCAT1), "> 12 months") res <- run(ext01, proc_data, prune_0 = FALSE, summaryvars = c("AVAL", "AVALCAT1"), map = map) expect_snapshot(cat(export_as_txt(res, lpp = 100))) })