# aet01 ---- test_that("aet01 can handle all NA values", { proc_data <- syn_data proc_data$adae <- proc_data$adae %>% mutate( AESDTH = NA, AESER = NA ) res <- expect_silent(run(aet01, proc_data)) expect_snapshot(cat(export_as_txt(res, lpp = 100))) res <- expect_silent(run(aet01, proc_data, prune_0 = TRUE)) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("aet01 can handle some NA values", { new_aesdth <- c(NA, "", as.character(syn_data$adae$AESDTH[-c(1, 2)])) new_aeser <- c(NA, "", as.character(syn_data$adae$AESER[-c(1, 2)])) proc_data <- syn_data proc_data$adae <- proc_data$adae %>% mutate( AESDTH = .env$new_aesdth, AESER = .env$new_aeser ) res <- expect_silent(run(aet01, proc_data)) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("aet01 can use custom anl_vars", { proc_data <- syn_data res <- expect_silent(run(aet01, proc_data, anl_vars = list(safety_var = "FATAL"))) expect_snapshot(cat(export_as_txt(res, lpp = 100))) }) test_that("aet01 fails on incomplete data input", { proc_data <- syn_data proc_data$adae <- proc_data$adae %>% mutate(AESER = NULL) expect_error( run(aet01, proc_data), "Column `AESER` not found", fixed = TRUE ) }) test_that("aet01 can use custom medconcept_var", { proc_data <- syn_data proc_data$adae$SMQ01 <- with_label(proc_data$adae$SMQ01NAM != "", "SMQ 01") res <- expect_silent( run( aet01, proc_data, anl_vars = list( safety_var = c( "FATAL", "SER", "SERWD", "SERDSM", "RELSER", "WD", "DSM", "REL", "RELWD", "RELDSM", "SEV" ), medconcept = "SMQ01" ) ) ) expect_snapshot(cat(export_as_txt(res, lpp = 100))) })