test_that("as data frame complete", { path <- system.file("examples/CITATION_complete.cff", package = "cffr") the_cff <- cff_read(path) # To df the_df <- as.data.frame(the_cff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(the_cff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) # As vector df_as_v <- as.character(as.vector(the_df[1, ])) expect_identical(allf, df_as_v) expect_snapshot(names(the_df)) }) test_that("as data frame partial", { path <- system.file("examples/CITATION_complete.cff", package = "cffr") the_cff <- cff_read(path) # To df authors only subcff <- the_cff$authors[[1]] the_df <- as.data.frame(subcff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(subcff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) # To df references only subcff <- the_cff$references[[1]] the_df <- as.data.frame(subcff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(subcff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) }) test_that("Convert a citation only", { path <- system.file("examples/DESCRIPTION_many_persons", package = "cffr") a_cit <- as_bibentry(cff_create(path)) the_cff <- as_cff(a_cit) # To df the_df <- as.data.frame(the_cff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(the_cff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) # As vector df_as_v <- as.character(as.vector(the_df[1, ])) expect_identical(allf, df_as_v) expect_snapshot(names(the_df)) }) test_that("Convert authors only", { a_pers_lst <- as_cff_person( "A person and {A Entity inc.} and {One person} more" ) the_cff <- a_pers_lst[[1]] # To df the_df <- as.data.frame(the_cff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(the_cff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) # As vector df_as_v <- as.character(as.vector(the_df[1, ])) expect_identical(allf, df_as_v) expect_snapshot(names(the_df)) }) test_that("Convert list of authors", { path <- system.file("examples/CITATION_complete.cff", package = "cffr") the_cff <- cff_read(path)$authors # To df the_df <- as.data.frame(the_cff) expect_s3_class(the_df, "data.frame") expect_equal(nrow(the_df), 1) # lengths allf <- unlist(the_cff, recursive = TRUE, use.names = FALSE) expect_identical(length(allf), ncol(the_df)) expect_identical(ncol(the_df), length(unique(names(the_df)))) # As vector df_as_v <- as.character(as.vector(the_df[1, ])) expect_identical(allf, df_as_v) expect_snapshot(names(the_df)) }) test_that("as.person method", { path <- system.file("examples/CITATION_complete.cff", package = "cffr") the_cff <- cff_read(path) getref <- the_cff$references[[1]] # Single entity pub <- as.person(getref$publisher) expect_s3_class(pub, "person") expect_snapshot(dput(pub)) expect_snapshot( format(pub, include = c("given", "family", "email", "role", "comment")) ) # Single person aut <- as.person(getref$authors[[1]]) expect_s3_class(aut, "person") expect_snapshot(dput(aut)) expect_snapshot( format(aut, include = c("given", "family", "email", "role", "comment")) ) # List of authors aut2 <- as.person(getref$authors) expect_s3_class(aut2, "person") expect_s3_class(aut2[1], "person") expect_s3_class(aut2[2], "person") expect_snapshot(dput(aut2)) expect_snapshot( format(aut2, include = c("given", "family", "email", "role", "comment")) ) # Malformed malf <- getref$authors malf[[1]] <- list(a = "list") expect_s3_class(malf, "cff_pers_lst") expect_snapshot(end <- as.person(malf)) expect_s3_class(end, "person") expect_length(end, 1) # Duplicates aa <- getref$authors aa[[3]] <- aa[[1]] expect_s3_class(aa, "cff_pers_lst") expect_snapshot(aa2 <- as.person(aa)) expect_s3_class(aa2, "person") expect_length(aa2, 2) }) test_that("as.person method names and particles", { str <- "von Wicksteed, III, P. H. and {The translator factory}" cf <- as_cff_person(str) expect_snapshot(cf) pers_bib <- toBibtex(as.person(cf)) again <- as_cff_person(pers_bib) expect_identical(cf, again) }) test_that("Errors on other as.person methods", { path <- system.file("examples/CITATION_complete.cff", package = "cffr") the_cff <- cff_read(path) expect_s3_class(the_cff, "cff", exact = TRUE) expect_snapshot(as.person(the_cff), error = TRUE) # identifiers key <- the_cff$identifiers expect_s3_class(key, c("cff_ref_lst", "cff"), exact = TRUE) expect_snapshot(as.person(key), error = TRUE) # preferred key <- the_cff$`preferred-citation` expect_s3_class(key, c("cff_ref", "cff"), exact = TRUE) expect_snapshot(as.person(key), error = TRUE) }) test_that("head and tail", { a_cff <- cff() expect_snapshot(a_cff) expect_snapshot(head(a_cff, 2)) expect_s3_class(head(a_cff, 2), "cff") expect_snapshot(tail(a_cff, 2)) expect_s3_class(tail(a_cff, 2), "cff") }) test_that("toBibtex", { # Create several alternatives descobj <- cff_read_description(system.file("examples/DESCRIPTION_basic", package = "cffr" )) citobj <- cff_read_citation(system.file("examples/CITATION_basic", package = "cffr" )) newbib <- cff_read_bib(system.file("examples/example.bib", package = "cffr" )) full_cff <- merge_desc_cit(descobj, c(newbib, citobj)) full_cff <- new_cff(full_cff) expect_true(cff_validate(full_cff, verbose = FALSE)) # A. validate extractions expect_snapshot(toBibtex(full_cff)) expect_snapshot(toBibtex(full_cff, what = "references")) expect_snapshot(toBibtex(full_cff, what = "all")) # single entries single <- toBibtex(full_cff$`preferred-citation`) expect_s3_class(single, "Bibtex") expect_equal(sum(names(single) == "title"), 1) # Several entries several <- toBibtex(full_cff$references) expect_s3_class(several, "Bibtex") expect_equal(sum(names(several) == "title"), 3) # One entry oneent <- toBibtex(full_cff$references[[1]]) expect_s3_class(single, "Bibtex") expect_equal(sum(names(oneent) == "title"), 1) fromfile <- toBibtex(newbib) expect_s3_class(fromfile, "Bibtex") expect_equal(sum(names(fromfile) == "title"), 2) # From lines string <- "@book{einstein1921, title = {Relativity: The Special and the General Theory}, author = {Einstein, A.}, year = 1920, publisher = {Henry Holt and Company}, address = {London, United Kingdom}, isbn = 9781587340925}" froml <- toBibtex(cff_read_bib_text(string)) expect_equal(sum(names(froml) == "title"), 1) # Persons sev_auth <- as_cff_person( "{The Big Bopper} and Frank Sinatra and Dean Martin and Davis, Jr., Sammy" ) expect_length(sev_auth, 4) expect_s3_class(sev_auth, "cff_pers_lst") expect_snapshot(toBibtex(sev_auth)) # Single person single <- as_cff_person(person("A", "person", email = "a@b.d"))[[1]] expect_s3_class(single, "cff_pers") expect_snapshot(toBibtex(single)) # Single entity single <- as_cff_person(person("{A and B co}", email = "a@b.d"))[[1]] expect_s3_class(single, "cff_pers") expect_snapshot(toBibtex(single)) }) test_that("as.list", { f <- system.file("examples/CITATION_complete.cff", package = "cffr") full_cff <- cff_read_cff_citation(f) # Capture dput and search dput_cff <- capture.output(dput(full_cff)) ntot_class <- sum(grepl("\"cff\"", dput_cff)) expect_gt(ntot_class, 30) # Unlist unl <- as.list(full_cff) # Capture dput and search dput_unl <- capture.output(dput(unl)) ntot_class_unl <- sum(grepl("\"cff\"", unl)) expect_identical(ntot_class_unl, 0L) # Reclass regen_cff <- as_cff(unl) expect_identical(full_cff, regen_cff) expect_true(cff_validate(regen_cff, verbose = FALSE)) })