# @author Quentin Grimonprez context("Check functions") test_that("checkData works", { expect_error(checkData(c()), "data must be a data.frame.") df <- data.frame(id = 1) expect_error(checkData(df), "Missing columns in data: time, state.") df <- data.frame(id = 1, time = 1, state = "e") expect_error(checkData(df), "There is only one row or less.") df <- data.frame(id = 1:2, time = c(1, NA), state = 1:2) expect_error(checkData(df), "There is some missing values.") df <- data.frame(id = 1:2, time = c(1, NA), state = letters[1:2]) expect_error(checkData(df), "There is some missing values.") df <- data.frame(id = 1:2, time = 1:2, state = 1:2) expect_silent(checkData(df)) }) test_that("is.whole.number works", { expect_true(is.whole.number(2)) expect_true(is.whole.number(2.)) expect_false(is.whole.number(2.5)) expect_equal(is.whole.number(NA), NA) expect_true(all(is.whole.number(1:5))) expect_equal(is.whole.number(c(0.5, 2)), c(FALSE, TRUE)) }) test_that("checkDataEndTmax works", { df <- data.frame(id = 1:2, time = 1:2, state = 1:2) expect_error(checkDataEndTmax(df), "Each individual must end with the same time value.") df <- data.frame(id = 1:2, time = rep(1, 2), state = 1:2) expect_silent(checkDataEndTmax(df)) }) test_that("checkDataBeginTime works", { df <- data.frame(id = 1:2, time = 1:2, state = 1:2) expect_error(checkDataBeginTime(df), "Each individual must begin with the same time value.") df <- data.frame(id = 1:2, time = rep(1, 1), state = 1:2) expect_silent(checkDataBeginTime(df)) }) test_that("checkDataNoDuplicatedTimes works", { df <- data.frame(id = rep(1:2, each = 2), time = c(0, 0, 1, 2), state = rep(1:2, 2)) expect_warning(checkDataNoDuplicatedTimes(df), "Some ids contain duplicated time values.") df <- data.frame(id = rep(1:2, each = 2), time = rep(1:2, 2), state = rep(1:2, 2)) expect_silent(checkDataNoDuplicatedTimes(df)) }) test_that("checkLogical works", { expect_silent(checkLogical(TRUE, "aa")) expect_error(checkLogical(c(TRUE, TRUE), "aa"), "aa must be either TRUE or FALSE.") expect_error(checkLogical(3, "aa"), "aa must be either TRUE or FALSE.") expect_error(checkLogical(NA, "aa"), "aa must be either TRUE or FALSE.") expect_error(checkLogical(NaN, "aa"), "aa must be either TRUE or FALSE.") })