* using log directory ‘/srv/hornik/tmp/CRAN_pretest/cdmTools.Rcheck’
* using R Under development (unstable) (2025-05-04 r88189)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘cdmTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cdmTools’ version ‘1.0.6’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Pablo Nájera <p.najeraalvarez@gmail.com>’

New maintainer:
  Pablo Nájera <p.najeraalvarez@gmail.com>
Old maintainer(s):
  Pablo Nájera <pnajera@comillas.edu>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .github
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  .github
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cdmTools’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  ‘GDINA:::LikNR’ ‘GDINA:::designM’ ‘GDINA:::item_latent_group’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'FCGDINA.Rd':
  \examples lines wider than 100 characters:
     Q.items <- do.call("rbind", replicate(5, diag(5), simplify = FALSE)) # Q-matrix for the unidimensional statements
     GS <- cbind(runif(n = nrow(Q.items), min = 0.1, max = 0.3), runif(n = nrow(Q.items), min = 0.1, max = 0.3)) # Guessing and slip
     polarity <- matrix(1, nrow = n.blocks, ncol = 2) # Block polarity (1 = direct statement; -1 = indirect statement)
     sim <- simFCGDINA(N = 1000, Q.items, n.blocks = n.blocks, polarity = polarity, model = "GDINA", GDINA.args = list(GS = GS), seed = 123)
     polarity[sample(x = 1:(2*n.blocks), size = 15, replace = FALSE)] <- -1 # Including 15 inverse statements
     sim <- simFCGDINA(N = 1000, Q.items, n.blocks = n.blocks, polarity = polarity, model = "GDINA", GDINA.args = list(GS = GS), seed = 123)
     priors <- list("Minimum" = c(1, 1), # Non-informative prior, Beta(1, 1), for latent group with ideal response = 0
                    "Intermediate" = c(1e8, 1e8), # Extremely informative prior, Beta(1e8, 1e8), for latent groups with ideal response = 0.5
                    "Maximum" = c(1, 1)) # Non-informative prior, Beta(1, 1), for latent group with ideal response = 1

Rd file 'simFCGDINA.Rd':
  \examples lines wider than 100 characters:
     Q.items <- do.call("rbind", replicate(5, diag(5), simplify = FALSE)) # Q-matrix for the unidimensional statements
     GS <- cbind(runif(n = nrow(Q.items), min = 0.1, max = 0.3), runif(n = nrow(Q.items), min = 0.1, max = 0.3)) # Guessing and slip
     polarity <- matrix(1, nrow = n.blocks, ncol = 2) # Block polarity (1 = direct statement; -1 = indirect statement)
     sim <- simFCGDINA(N = 1000, Q.items, n.blocks = n.blocks, polarity = polarity, model = "GDINA", GDINA.args = list(GS = GS), seed = 123)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [12s/12s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs