installing dependencies ‘cdmTools’, ‘GDINA’, ‘NPCD’ also installing the dependencies ‘Rcsdp’, ‘fungible’ begin installing package ‘Rcsdp’ begin installing package ‘NPCD’ begin installing package ‘GDINA’ * installing *source* package ‘NPCD’ ... ** this is package ‘NPCD’ version ‘1.0-11’ ** package ‘NPCD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NPCD) * installing *source* package ‘Rcsdp’ ... ** this is package ‘Rcsdp’ version ‘0.1.57.6’ ** package ‘Rcsdp’ successfully unpacked and MD5 sums checked ** using staged installation Using bundled CSDP checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-15 -E configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDKucF4/R.INSTALL3dda362e5f13/Rcsdp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rcsdp.c -o Rcsdp.o Rcsdp.c: In function ‘csdp’: Rcsdp.c:37:47: warning: variable ‘blocksizes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:34: warning: variable ‘blocktypes’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~~~~ Rcsdp.c:37:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 37 | int n, nblocks, nconstraints, *blocktypes, *blocksizes; | ^~~~~~~ Rcsdp.c: In function ‘writesdpa’: Rcsdp.c:230:10: warning: variable ‘nblocks’ set but not used [-Wunused-but-set-variable] 230 | int n, nblocks, nconstraints, status; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c convert.c -o convert.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -ICsdp/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testing.c -o testing.o (cd Csdp/lib && \ (make libsdp.a CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include" AR="ar" RANLIB="ranlib") && \ touch Csdp.ts) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpDKucF4/R.INSTALL3dda362e5f13/Rcsdp/src/Csdp/lib' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o readprob.o readprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o sdp.o sdp.c sdp.c: In function ‘sdp’: sdp.c:748: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 748 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k,workvec8) private(i,j) sdp.c:793: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 793 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(O,k,ldam) sdp.c:142:7: warning: variable ‘lastimprove’ set but not used [-Wunused-but-set-variable] 142 | int lastimprove=0; | ^~~~~~~~~~~ sdp.c:131:10: warning: variable ‘newdobj’ set but not used [-Wunused-but-set-variable] 131 | double newdobj; | ^~~~~~~ sdp.c:130:10: warning: variable ‘newpobj’ set but not used [-Wunused-but-set-variable] 130 | double newpobj; | ^~~~~~~ sdp.c:129:10: warning: variable ‘oldmaxrelinfeas’ set but not used [-Wunused-but-set-variable] 129 | double oldmaxrelinfeas=1.0e100; | ^~~~~~~~~~~~~~~ sdp.c:112:10: warning: variable ‘oldmu’ set but not used [-Wunused-but-set-variable] 112 | double oldmu; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o op_o.o op_o.c op_o.c: In function ‘op_o’: op_o.c:124: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 124 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) op_o.c:136: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 136 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(k,constraints,byblocks,Zi,X,O,work1, work2, work, ldam) private(j, ii, jj, blocksize, p, q, r, s, ptri, ptrj, blocknum, contrib, Ziblk, Xblk, workblk, work2blk, enti, entj, scale1, scale2, thread_num) op_o.c:432: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 432 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o psd_feas.o psd_feas.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o op_a.o op_a.c op_a.c: In function ‘op_a’: op_a.c:23: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 23 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,contrib,ptr,blk,nume,vec,j,p,mat,ent,q) shared(k,constraints,result,X) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o op_at.o op_at.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o Fnorm.o Fnorm.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o calc_pobj.o calc_pobj.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o calc_dobj.o calc_dobj.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o trace_prod.o trace_prod.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o zero_mat.o zero_mat.c zero_mat.c: In function ‘zero_mat’: zero_mat.c:32: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 32 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(A,blk) private(j,i) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o mat_mult.o mat_mult.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o sym_mat.o sym_mat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o copy_mat.o copy_mat.c copy_mat.c: In function ‘copy_mat’: copy_mat.c:27: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 27 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o addscaledmat.o addscaledmat.c addscaledmat.c: In function ‘addscaledmat’: addscaledmat.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(A,B,C,scale,blk) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o user_exit.o user_exit.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o make_i.o make_i.c make_i.c: In function ‘make_i’: make_i.c:24: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 24 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,p,A) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o allocmat.o allocmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o initsoln.o initsoln.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o initparams.o initparams.c initparams.c: In function ‘initparams’: initparams.c:33:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 33 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol)); | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o add_mat.o add_mat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o writesol.o writesol.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o readsol.o readsol.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o easysdp.o easysdp.c easysdp.c: In function ‘easy_sdp’: easysdp.c:61:7: warning: variable ‘blk’ set but not used [-Wunused-but-set-variable] 61 | int blk; | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o writeprob.o writeprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o solvesys.o solvesys.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o makefill.o makefill.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o mat_multsp.o mat_multsp.c mat_multsp.c: In function ‘mat_multspb’: mat_multsp.c:171: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 171 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,C,scale2) mat_multsp.c:57:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 57 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:56:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 56 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspa’: mat_multsp.c:410: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 410 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) mat_multsp.c:295:7: warning: unused variable ‘thread_num’ [-Wunused-variable] 295 | int thread_num; | ^~~~~~~~~~ mat_multsp.c:294:7: warning: unused variable ‘total_threads’ [-Wunused-variable] 294 | int total_threads; | ^~~~~~~~~~~~~ mat_multsp.c: In function ‘mat_multspc’: mat_multsp.c:595: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 595 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,ii,p,q,temp) shared(ptr,A,B,C,blk,blksize,scale1) mat_multsp.c:636: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 636 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o norms.o norms.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o linesearch.o linesearch.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o matvec.o matvec.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o chol.o chol.c chol.c: In function ‘chol_inv’: chol.c:150:10: warning: variable ‘scale’ set but not used [-Wunused-but-set-variable] 150 | double scale; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o qreig.o qreig.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o tweakgap.o tweakgap.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o freeprob.o freeprob.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o packed.o packed.c packed.c: In function ‘store_packed’: packed.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 30 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) packed.c: In function ‘store_unpacked’: packed.c:63: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 63 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n) packed.c: In function ‘triu’: packed.c:188: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 188 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(A,n) gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -I/home/hornik/tmp/R/include -c -o sortentries.o sortentries.c ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpDKucF4/R.INSTALL3dda362e5f13/Rcsdp/src/Csdp/lib' gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rcsdp.so Rcsdp.o convert.o testing.o -LCsdp/lib -lsdp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDKucF4/R.INSTALL3dda362e5f13/Rcsdp/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-Rcsdp/00new/Rcsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcsdp) begin installing package ‘fungible’ * installing *source* package ‘fungible’ ... ** this is package ‘fungible’ version ‘2.4.4.1’ ** package ‘fungible’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fungible) * installing *source* package ‘GDINA’ ... ** this is package ‘GDINA’ version ‘2.9.12’ ** package ‘GDINA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpx4pBtC/R.INSTALL3dda553499f69/GDINA/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Lik.cpp -o Lik.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Lik2.cpp -o Lik2.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LouisC.cpp -o LouisC.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Mord.cpp -o Mord.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Mstep.cpp -o Mstep.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NgRg.cpp -o NgRg.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SE.cpp -o SE.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c aggregateCol.cpp -o aggregateCol.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitstats.cpp -o fitstats.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scorep.cpp -o scorep.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sequP.cpp -o sequP.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c varsigma.cpp -o varsigma.o 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GDINA.so Lik.o Lik2.o LouisC.o Mord.o Mstep.o NgRg.o RcppExports.o SE.o aggregateCol.o fitstats.o scorep.o sequP.o util.o varsigma.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpx4pBtC/R.INSTALL3dda553499f69/GDINA/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-GDINA/00new/GDINA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GDINA) begin installing package ‘cdmTools’ * installing *source* package ‘cdmTools’ ... ** this is package ‘cdmTools’ version ‘1.0.6’ ** package ‘cdmTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cdmTools) checking cdcatR_1.0.7.tar.gz ... Depends: Package: cdcatR Depends: R (>= 3.5.0) Imports: cdmTools (>= 1.0.1), GDINA (>= 2.2.0), ggplot2 (>= 3.3.0), cowplot, foreach, doSNOW, NPCD, stats Timings: user system elapsed cdcatR 103.958 8.053 226.298 Results: Check status summary: OK Source packages 1 Check results summary: cdcatR ... OK