require(ks) test_that("k-way matching with one odd-ball per-group", { nrep <- 100 res <- sapply(1:nrep, function(i) { Ts <- c(rep(1, 100), rep(2, 100)) Xs <- cbind(c(-4, runif(99), runif(99), 5), runif(200), runif(200)) retained.ids <- suppressWarnings(cb.align.kway_match(Ts, data.frame(Covar=Xs), match.form = "Covar.1 + Covar.2 + Covar.3", match.args=list(method="nearest", caliper=0.5, exact=NULL,replace=FALSE))) excl_samps.s1 <- !(1 %in% retained.ids) excl_samps.s200 <- !(200 %in% retained.ids) incl_samps <- sum(2:199 %in% retained.ids)/198 > .9 # want to exclude samples 1 and 200 and include all other samples # at a high rate return(excl_samps.s1 + excl_samps.s200 + incl_samps == 3) }) # check that works most of time expect_true(mean(res) > .8) }) test_that("as unbalancedness increases, fewer samples retained by k-way matching", { sim.high <- cb.sims.sim_sigmoid(unbalancedness=1) retained.high <- cb.align.kway_match(sim.high$Ts, data.frame(Covar=sim.high$Xs), match.form="Covar") sim.mod <- cb.sims.sim_sigmoid(unbalancedness=1.5) retained.mod <- cb.align.kway_match(sim.mod$Ts, data.frame(Covar=sim.mod$Xs), match.form="Covar") sim.low <- cb.sims.sim_sigmoid(unbalancedness=2.5) retained.low <- cb.align.kway_match(sim.low$Ts, data.frame(Covar=sim.low$Xs), match.form="Covar", retain.ratio=0) rank.lengths <- rank(c(length(retained.high), length(retained.mod), length(retained.low))) expect_true(all(rank.lengths == c(3, 2, 1))) }) test_that("K-way matching throws warning when samples retained is low", { sim.low <- cb.sims.sim_sigmoid(unbalancedness=1.5) expect_warning(cb.align.kway_match(sim.low$Ts, data.frame(Covar=sim.low$Xs), match.form="Covar", retain.ratio = 0.7)) }) test_that("K-way matching throws error when no samples retained", { sim.low <- cb.sims.sim_sigmoid(unbalancedness=10) expect_error(suppressWarnings(cb.align.kway_match(sim.low$Ts, data.frame(Covar=sim.low$Xs), match.form="Covar", retain.ratio = 0.5))) }) approx.overlap <- function(X1, X2, nbreaks=100) { xbreaks <- seq(from=-1, to=1, length.out=nbreaks) x1.dens <- kde(X1, eval.points=xbreaks)$estimate x2.dens <- kde(X2, eval.points=xbreaks)$estimate sum(pmin(x1.dens/sum(x1.dens), x2.dens/sum(x2.dens))) } test_that("K-way matching increases covariate overlap", { sim.mod <- cb.sims.sim_sigmoid(n=200, unbalancedness = 2) retained.ids <- cb.align.kway_match(sim.mod$Ts, data.frame(Covar=sim.mod$Xs), match.form="Covar", retain.ratio = 0) Ts.tilde <- sim.mod$Ts[retained.ids] Xs.tilde <- sim.mod$Xs[retained.ids] ov.before <- approx.overlap(sim.mod$Xs[sim.mod$Ts == 0], sim.mod$Xs[sim.mod$Ts == 1]) ov.after <- approx.overlap(Xs.tilde[Ts.tilde == 0], Xs.tilde[Ts.tilde == 1]) expect_true(ov.before < ov.after) })