R Under development (unstable) (2024-11-15 r87338 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(catalytic)
> 
> test_check("catalytic")

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000279 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.79 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
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Chain 1: 
Chain 1:  Elapsed Time: 0.069 seconds (Warm-up)
Chain 1:                0.058 seconds (Sampling)
Chain 1:                0.127 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000204 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.04 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.053 seconds (Warm-up)
Chain 1:                0.058 seconds (Sampling)
Chain 1:                0.111 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00012 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.2 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.023 seconds (Warm-up)
Chain 1:                0.018 seconds (Sampling)
Chain 1:                0.041 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000177 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.77 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.051 seconds (Warm-up)
Chain 1:                0.028 seconds (Sampling)
Chain 1:                0.079 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 8.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.88 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.019 seconds (Warm-up)
Chain 1:                0.017 seconds (Sampling)
Chain 1:                0.036 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000168 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.68 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1:          three stages of adaptation as currently configured.
Chain 1:          Reducing each adaptation stage to 15%/75%/10% of
Chain 1:          the given number of warmup iterations:
Chain 1:            init_buffer = 7
Chain 1:            adapt_window = 38
Chain 1:            term_buffer = 5
Chain 1: 
Chain 1: Iteration:  1 / 100 [  1%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.043 seconds (Warm-up)
Chain 1:                0.065 seconds (Sampling)
Chain 1:                0.108 seconds (Total)
Chain 1: 

SAMPLING FROM GIBB'S NOW 
Gibb's sampling: 
Gibb's sampling: 
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Gibb's sampling: 
Gibb's sampling:  Elapsed Time: 10.094 seconds (Warm-up)
Gibb's sampling:                10.245 seconds (Sampling)
Gibb's sampling:                20.339 seconds (Total)
Gibb's sampling: 
boundary (singular) fit: see help('isSingular')

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000149 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.49 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Iteration:   1 / 1000 [  0%]  (Warmup)
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Chain 1: Iteration: 1000 / 1000 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.162 seconds (Warm-up)
Chain 1:                0.127 seconds (Sampling)
Chain 1:                0.289 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000134 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.34 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Iteration:   1 / 1000 [  0%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.342 seconds (Warm-up)
Chain 1:                0.349 seconds (Sampling)
Chain 1:                0.691 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000141 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.41 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Iteration:   1 / 1000 [  0%]  (Warmup)
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Chain 1: 
Chain 1:  Elapsed Time: 0.219 seconds (Warm-up)
Chain 1:                0.305 seconds (Sampling)
Chain 1:                0.524 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000173 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.73 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
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Chain 1: 
Chain 1:  Elapsed Time: 0.78 seconds (Warm-up)
Chain 1:                0.669 seconds (Sampling)
Chain 1:                1.449 seconds (Total)
Chain 1: 

SAMPLING FROM GIBB'S NOW 
Gibb's sampling: 
Gibb's sampling: 
Gibb's sampling: 100  /  1000 [ 10 %]  (Warmup)
Gibb's sampling: 200  /  1000 [ 20 %]  (Warmup)
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Gibb's sampling: 1000  /  1000 [ 100 %]  (Sampling)
Gibb's sampling: 
Gibb's sampling:  Elapsed Time: 10.622 seconds (Warm-up)
Gibb's sampling:                9.985 seconds (Sampling)
Gibb's sampling:                20.607 seconds (Total)
Gibb's sampling: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.00025 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.5 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Iteration:   1 / 1000 [  0%]  (Warmup)
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Chain 1: Iteration: 1000 / 1000 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.352 seconds (Warm-up)
Chain 1:                0.196 seconds (Sampling)
Chain 1:                0.548 seconds (Total)
Chain 1: 

SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
Chain 1: 
Chain 1: Gradient evaluation took 0.000353 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 3.53 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1: 
Chain 1: 
Chain 1: Iteration:   1 / 1000 [  0%]  (Warmup)
Chain 1: Iteration: 100 / 1000 [ 10%]  (Warmup)
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Chain 1: Iteration: 1000 / 1000 [100%]  (Sampling)
Chain 1: 
Chain 1:  Elapsed Time: 0.408 seconds (Warm-up)
Chain 1:                0.383 seconds (Sampling)
Chain 1:                0.791 seconds (Total)
Chain 1: 
[ FAIL 0 | WARN 0 | SKIP 5 | PASS 658 ]

══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-cat_cox_bayes.R:39:3', 'test-cat_glm_bayes.R:61:3',
  'test-cat_glm_bayes.R:107:3', 'test-cat_glm_bayes_joint.R:62:3',
  'test-cat_glm_bayes_joint.R:166:3'

[ FAIL 0 | WARN 0 | SKIP 5 | PASS 658 ]
> 
> proc.time()
   user  system elapsed 
 108.62    6.29 2143.54