* using log directory 'd:/RCompile/CRANincoming/R-devel/caroline.Rcheck' * using R Under development (unstable) (2024-10-19 r87247 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'caroline/DESCRIPTION' ... OK * this is package 'caroline' version '0.9.9' * checking CRAN incoming feasibility ... OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'caroline' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fit.1ln.rprt: no visible global function definition for 'coefficients' plot.confound.grid: no visible global function definition for 'quantile' plot.xy.ab.p: no visible global function definition for 'lm' Undefined global functions or variables: coefficients lm quantile Consider adding importFrom("stats", "coefficients", "lm", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'caroline-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot.xy.ab.p > ### Title: An x/y scatterplot with a linear regression line and p-value > ### Aliases: plot.xy.ab.p xy.ab.p > > ### ** Examples > > > path <- system.file("extdata","primate-example.data.csv", package="mmodely") > data <- read.csv(path, row.names=1) Warning in file(file, "rt") : file("") only supports open = "w+" and open = "w+b": using the former Error in read.table(file = file, header = header, sep = sep, quote = quote, : no lines available in input Calls: read.csv -> read.table Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE