R Under development (unstable) (2025-06-19 r88329 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(future)
> library(tibble)
> library(purrr)

Attaching package: 'purrr'

The following object is masked from 'package:testthat':

    is_null

> 
> library(caretSDM)
> 
> test_check("caretSDM")
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
Linking to GEOS 3.13.1, GDAL 3.11.0, PROJ 9.6.0; sf_use_s2() is TRUE
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
  s1_names         s2_names
1     bio1  wc2.1_10m_bio_1
2    bio12 wc2.1_10m_bio_12
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 1 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 2 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 2 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 0 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 31 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 5 records.
Testing coordinate validity
Removed 0 records.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 31 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 5 records.
Testing coordinate validity
Removed 0 records.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
Cell_ids identified, removing duplicated cell_id.
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
Testing country capitals
Removed 0 records.
Testing country centroids
Removed 0 records.
Testing duplicates
Removed 0 records.
Testing equal lat/lon
Removed 0 records.
Testing biodiversity institutions
Removed 1 records.
Testing coordinate validity
Removed 0 records.
Predictors identified, procceding with grid filter (removing NA and duplicated data).
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
Loading required package: ggplot2
Loading required package: lattice

Attaching package: 'caret'

The following object is masked from 'package:caretSDM':

    predictors

The following object is masked from 'package:purrr':

    lift

The following object is masked from 'package:future':

    cluster

! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "Projecting: 1/1"
[1] "Projecting: 1/2"
[1] "Projecting: 2/2"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
[1] "teste"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
trying to read file: test.gpkg
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using sf/Stars to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
[1] "Projecting: 1/1"
[1] "Projecting: 1/1"
[1] "Ensembling..."
[1] "current"
[1] "Araucaria angustifolia"
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
ℹ Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over the study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
! Making grid over study area is an expensive task. Please, be patient!
i Using GDAL to make the grid and resample the variables.
[ FAIL 2 | WARN 1 | SKIP 22 | PASS 573 ]

══ Skipped tests (22) ══════════════════════════════════════════════════════════
• On CRAN (22): 'test-add_predictors.R:392:3', 'test-input_sdm.R:8:3',
  'test-names.R:38:3', 'test-occurrences_sdm.R:335:3',
  'test-pca_predictors.R:15:3', 'test-pca_predictors.R:31:3',
  'test-predict_sdm.R:42:3', 'test-predict_sdm.R:73:3',
  'test-predict_sdm.R:102:3', 'test-sdm_area.R:55:3', 'test-sdm_area.R:234:3',
  'test-sdm_area.R:282:3', 'test-sdm_area.R:303:3', 'test-sdm_area.R:328:3',
  'test-sdm_area.R:355:3', 'test-sdm_area.R:361:3', 'test-sdm_area.R:378:3',
  'test-train_sdm.R:33:3', 'test-train_sdm.R:49:3', 'test-train_sdm.R:65:3',
  'test-train_sdm.R:79:3', 'test-train_sdm.R:94:3'

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-write.R:13:3'): write_gpkg.sdm_area - salvar arquivo com sf ────
Error in `setwd(dir = new)`: cannot change working directory
Backtrace:
    ▆
 1. └─withr::with_tempdir(...) at test-write.R:13:3
 2.   └─withr::with_dir(tmp, code)
 3.     └─base::setwd(dir = new)
── Error ('test-write.R:45:3'): write_gpkg.sdm_area - salvar arquivo com sf file path invalido ──
Error in `write_gpkg(sa, file_path = "/tmp", file_name = 1)`: x Assertion on file_path failed.
i Directory '/tmp' does not exist
Backtrace:
     ▆
  1. ├─testthat::expect_error(...) at test-write.R:45:3
  2. │ └─testthat:::expect_condition_matching(...)
  3. │   └─testthat:::quasi_capture(...)
  4. │     ├─testthat (local) .capture(...)
  5. │     │ └─base::withCallingHandlers(...)
  6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  7. └─caretSDM::write_gpkg(sa, file_path = "/tmp", file_name = 1)
  8.   └─caretSDM:::assert_directory_cli(file_path)
  9.     └─caretSDM:::make_assertion(...)
 10.       └─cli::cli_abort(...)
 11.         └─rlang::abort(...)

[ FAIL 2 | WARN 1 | SKIP 22 | PASS 573 ]
Error: Test failures
Execution halted