# ard_hierarchical() ----------------------------------------------------------- test_that("ard_hierarchical() works without by variables", { expect_error( ard_heir_no_by <- ard_hierarchical( data = ADAE, variables = c(AESOC, AETERM), denominator = ADSL ), NA ) expect_snapshot(class(ard_heir_no_by)) expect_equal( ard_heir_no_by |> dplyr::filter(group1_level == "CARDIAC DISORDERS", variable_level == "ATRIAL FIBRILLATION") |> get_ard_statistics(.attributes = NULL), dplyr::tibble( n = ADAE |> dplyr::filter(AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL FIBRILLATION") |> nrow(), N = nrow(ADSL), p = n / N ) |> as.list() ) }) test_that("ard_hierarchical() works with by variable", { expect_error( ard_heir_with_by <- ard_hierarchical( data = ADAE, variables = c(AESOC, AETERM), by = TRTA, denominator = ADSL |> dplyr::rename(TRTA = ARM) ), NA ) expect_equal( ard_heir_with_by |> dplyr::filter(group1_level == "Placebo", group2_level == "CARDIAC DISORDERS", variable_level == "ATRIAL FIBRILLATION") |> get_ard_statistics(.attributes = NULL), dplyr::tibble( n = ADAE |> dplyr::filter(TRTA == "Placebo", AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL FIBRILLATION") |> nrow(), N = ADSL |> dplyr::filter(ARM == "Placebo") |> nrow(), p = n / N ) |> as.list() ) }) test_that("ard_hierarchical() works with by variable not present in 'denominator'", { expect_error( ard_heir_with_by <- ard_hierarchical( data = ADAE, variables = c(AESOC, AETERM), by = c(TRTA, AESEV), denominator = ADSL |> dplyr::rename(TRTA = ARM) ), NA ) expect_equal( ard_heir_with_by |> dplyr::filter( group1_level == "Placebo", group2_level == "MILD", group3_level == "CARDIAC DISORDERS", variable_level == "ATRIAL HYPERTROPHY" ) |> get_ard_statistics(.attributes = NULL), dplyr::tibble( n = ADAE |> dplyr::filter( TRTA == "Placebo", AESEV == "MILD", AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL HYPERTROPHY" ) |> nrow(), N = ADSL |> dplyr::filter(ARM == "Placebo") |> nrow(), p = n / N ) |> as.list() ) }) test_that("ard_hierarchical() works without any variables", { expect_snapshot( ard_hierarchical( data = ADAE, variables = starts_with("xxxx"), by = c(TRTA, AESEV) ) ) }) test_that("ard_hierarchical(id) argument works", { expect_snapshot( ard_hierarchical( data = ADAE, variables = c(AESOC, AETERM), by = c(TRTA, AESEV), denominator = ADSL |> dplyr::rename(TRTA = ARM), id = USUBJID ) |> head(1L) ) # testing pluralization works in warning message expect_snapshot( ard_hierarchical( data = ADAE, variables = c(AESOC, AETERM), by = c(TRTA, AESEV), denominator = ADSL |> dplyr::rename(TRTA = ARM), id = c(USUBJID, SITEID) ) |> head(1L) ) }) # ard_hierarchical_count() ----------------------------------------------------- test_that("ard_hierarchical_count() works without by variables", { expect_error( ard_heir_no_by <- ard_hierarchical_count( data = ADAE, variables = c(AESOC, AETERM) ), NA ) expect_snapshot(class(ard_heir_no_by)) expect_equal( ard_heir_no_by |> dplyr::filter(group1_level == "CARDIAC DISORDERS", variable_level == "ATRIAL FIBRILLATION") |> get_ard_statistics(.attributes = NULL), list( n = ADAE |> dplyr::filter(AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL FIBRILLATION") |> nrow() ) ) expect_equal( ard_heir_no_by |> dplyr::filter(variable == "AESOC", variable_level == "CARDIAC DISORDERS") |> get_ard_statistics(.attributes = NULL), list( n = ADAE |> dplyr::filter(AESOC == "CARDIAC DISORDERS") |> nrow() ) ) }) test_that("ard_hierarchical_count() works with by variable", { expect_error( ard_heir_with_by <- ard_hierarchical_count( data = ADAE, variables = c(AESOC, AETERM), by = TRTA ), NA ) expect_equal( ard_heir_with_by |> dplyr::filter( group1_level == "Placebo", group2_level == "CARDIAC DISORDERS", variable_level == "ATRIAL HYPERTROPHY" ) |> get_ard_statistics(.attributes = NULL), list( n = ADAE |> dplyr::filter(TRTA == "Placebo", AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL HYPERTROPHY") |> nrow() ) ) }) test_that("ard_hierarchical_count() works with by variable not present in 'denominator'", { expect_error( ard_heir_with_by <- ard_hierarchical_count( data = ADAE, variables = c(AESOC, AETERM), by = c(TRTA, AESEV) ), NA ) expect_equal( ard_heir_with_by |> dplyr::filter( group1_level == "Placebo", group2_level == "MILD", group3_level == "CARDIAC DISORDERS", variable_level == "ATRIAL HYPERTROPHY" ) |> get_ard_statistics(.attributes = NULL), list( n = ADAE |> dplyr::filter( TRTA == "Placebo", AESEV == "MILD", AESOC == "CARDIAC DISORDERS", AETERM == "ATRIAL HYPERTROPHY" ) |> nrow() ) ) }) test_that("ard_hierarchical_count() works without any variables", { expect_snapshot( ard_hierarchical_count( data = ADAE, variables = starts_with("xxxx"), by = c(TRTA, AESEV) ) ) }) test_that("ard_hierarchical() and ard_hierarchical_count() with grouped data works", { expect_equal( ADAE |> dplyr::group_by(TRTA) |> ard_hierarchical( variables = c(AESOC, AETERM), denominator = ADSL |> dplyr::rename(TRTA = ARM) ), ard_hierarchical( data = ADAE, by = TRTA, variables = c(AESOC, AETERM), denominator = ADSL |> dplyr::rename(TRTA = ARM) ) ) expect_equal( ADAE |> dplyr::group_by(TRTA) |> ard_hierarchical_count( variables = c(AESOC, AETERM) ), ard_hierarchical_count( data = ADAE, by = TRTA, variables = c(AESOC, AETERM) ) ) })