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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(cancerradarr) > > test_check("cancerradarr") processing file: static_report.Rmd output file: D:/temp/2025_11_10_11_45_16_17213/Rtmpmu9v9b/static_report.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS "D:\temp\2025_11_10_11_45_16_17213\Rtmpmu9v9b\static_report.knit.md" --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc3e602fea678.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 4 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_11_10_11_45_16_17213\Rtmpmu9v9b\rmarkdown-str3e603c154a75.html" --variable code_folding=hide --variable code_menu=1 Output created: D:/temp/2025_11_10_11_45_16_17213/Rtmpmu9v9b/test_output.html > input_file_test.xlsx has been created, please fill it with cancer registry data > Reading D:/RCompile/CRANincoming/R-devel/lib/cancerradarr/extdata/ex_cancerRADAR_input_filled.xlsx > Reference population aggregation custom aggregation ==================>------------ 58% | ETA: 2s > Aggregation level: un_region - Data aggregation.. custom aggregation ==>---------------------------- 8% | ETA: 20s custom aggregation =====>------------------------- 18% | ETA: 24s custom aggregation ============>------------------ 39% | ETA: 13s custom aggregation ===============>--------------- 50% | ETA: 11s custom aggregation ===================>----------- 65% | ETA: 8s custom aggregation ========================>------ 79% | ETA: 5s custom aggregation =========================>----- 82% | ETA: 4s custom aggregation =============================>- 98% | ETA: 0s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: un_subregion - Data aggregation.. custom aggregation ==>---------------------------- 7% | ETA: 48s custom aggregation ===>--------------------------- 9% | ETA: 1m custom aggregation ===>--------------------------- 11% | ETA: 1m custom aggregation =====>------------------------- 16% | ETA: 1m custom aggregation ======>------------------------ 21% | ETA: 1m custom aggregation ========>---------------------- 26% | ETA: 50s custom aggregation =========>--------------------- 30% | ETA: 47s custom aggregation ==========>-------------------- 33% | ETA: 47s custom aggregation ==============>---------------- 48% | ETA: 29s custom aggregation ================>-------------- 52% | ETA: 28s custom aggregation =================>------------- 56% | ETA: 25s custom aggregation ====================>---------- 65% | ETA: 19s custom aggregation =====================>--------- 69% | ETA: 17s custom aggregation ======================>-------- 74% | ETA: 14s custom aggregation ========================>------ 79% | ETA: 12s custom aggregation =========================>----- 84% | ETA: 9s custom aggregation ============================>-- 94% | ETA: 3s custom aggregation =============================>- 97% | ETA: 2s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: hdi_cat - Data aggregation.. custom aggregation =====>------------------------- 18% | ETA: 13s custom aggregation ========>---------------------- 25% | ETA: 16s custom aggregation ===============>--------------- 49% | ETA: 8s custom aggregation ====================>---------- 65% | ETA: 6s custom aggregation =========================>----- 82% | ETA: 3s custom aggregation =============================>- 96% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: any_migr - Data aggregation.. - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: asr_rank_cat - Data aggregation.. custom aggregation =====>------------------------- 15% | ETA: 18s custom aggregation =========>--------------------- 31% | ETA: 14s custom aggregation =============>----------------- 44% | ETA: 12s custom aggregation ====================>---------- 65% | ETA: 6s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > D:\temp\2025_11_10_11_45_16_17213\Rtmpmu9v9b\file3e6039a96a72.xlsx created! processing file: static_report.Rmd output file: D:/temp/2025_11_10_11_45_16_17213/Rtmpmu9v9b/static_report.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS "D:\temp\2025_11_10_11_45_16_17213\Rtmpmu9v9b\static_report.knit.md" --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output pandoc3e6063544c8.html --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 4 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.6\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_11_10_11_45_16_17213\Rtmpmu9v9b\rmarkdown-str3e6076d545bf.html" --variable code_folding=hide --variable code_menu=1 Output created: D:/temp/2025_11_10_11_45_16_17213/Rtmpmu9v9b/file3e6039a96a72.html [ FAIL 0 | WARN 0 | SKIP 0 | PASS 265 ] > > proc.time() user system elapsed 293.87 22.96 320.26