#' Helper function to compare a CSV file against the meta.xml file #' #' Compares the file name and column headers (without namespace) in a CSV file #' with (respectively) the `location` and `fields` as defined in the `meta.xml` #' file. #' #' @param file Path to CSV file. #' @param core Name of core CSV file. #' @inheritDotParams expect_identical info label #' @noRd #' @examples #' expect_comform_meta("tests/testthat/_snaps/write_dwc/multimedia.csv") expect_comform_meta <- function(file, core = "occurrence.csv", ...) { core_or_extension <- ifelse(basename(file) == core, "core", "extension") # Parse reference meta.xml from inst/extdata/meta.xml xml_list <- xml2::read_xml(system.file("extdata", "meta.xml", package = "camtrapdp")) %>% xml2::as_list() xml_file_location <- purrr::chuck(xml_list, "archive", core_or_extension, "files", "location") %>% unlist() xml_file_fields <- xml_list %>% purrr::chuck("archive", core_or_extension) %>% purrr::map_dfr(~ dplyr::tibble( index = as.numeric(attr(.x, which = "index")), term = attr(.x, which = "term") )) %>% dplyr::filter(!is.na(term)) %>% dplyr::mutate(field = basename(term), .keep = "unused") # Get fields from csv csv_file_cols <- readr::read_csv(file, show_col_types = FALSE) %>% colnames() %>% purrr::map_chr(~ sub("^[A-Za-z]+:", "", .x)) # Remove namespace like "dcterms:" csv_file_fields <- dplyr::tibble(field = csv_file_cols) %>% dplyr::mutate(index = as.integer(rownames(.)) - 1, .before = field) # Add index # Compare testthat::expect_identical(csv_file_fields, xml_file_fields, ) testthat::expect_identical(basename(file), xml_file_location) }