library(testthat) context("Test all types of treatment entries") test_that("Bolus is working correctly", { bolus <- Bolus(time=0, amount=1000) expect_equal(bolus@time, 0) expect_equal(bolus@amount, 1000) expect_equal(bolus %>% getName(), "BOLUS [TIME=0, CMT=NA]") }) test_that("Infusion is working correctly", { infusion <- Infusion(time=0, amount=1000) expect_equal(infusion@time, 0) expect_equal(infusion@amount, 1000) expect_equal(infusion %>% getName(), "INFUSION [TIME=0, CMT=NA]") }) test_that("Infusion errors", { expect_error(Infusion(time=0)) # amount is missing }) test_that("Infusion time is negative", { expect_error(Infusion(time=-1, amount=100), regexp="Some values in slot 'time' are negative") }) test_that("Is treatment entry test", { expect_true(is(new("bolus", time=0, amount=100), "treatment_entry")) }) test_that("sample method for bolus is working well", { bolus <- Bolus(time=0, amount=1000, f=0.6, lag=ConstantDistribution(2)) res <- bolus %>% sample(n=as.integer(10)) expect_equal(res$ID, seq_len(10)) expect_equal(unique(res$AMT), 1000*0.6) expect_equal(unique(res$TIME), 0+2) }) test_that("sample method for infusion is working well", { infusion <- Infusion(time=0, amount=1000, duration=2) res <- infusion %>% sample(n=as.integer(10)) expect_equal(res$ID, seq_len(10)) expect_equal(unique(res$RATE), 1000/2) infusion <- Infusion(time=0, amount=1000, rate=200) res <- infusion %>% sample(n=as.integer(10)) expect_equal(res$ID, seq_len(10)) expect_equal(unique(res$RATE), 200) }) test_that("'time' vector or 'ii' and 'addl' are equivalent (boluses)", { boluses1 <- Bolus(time=c(0,24,48), amount=100) expect_equal(boluses1 %>% length(), 3) boluses2 <- Bolus(time=0, amount=100, ii=24, addl=2) expect_equal(boluses2 %>% length(), 3) expect_equal(boluses1, boluses2) bolus1 <- Bolus(time=24, amount=100) bolus2 <- Bolus(time=24, amount=100, ii=24, addl=0) expect_equal(list(bolus1), bolus2) }) test_that("'time' vector or 'ii' and 'addl' are equivalent (infusions)", { infusions1 <- Infusion(time=c(0,24,48), amount=100) expect_equal(infusions1 %>% length(), 3) infusions2 <- Infusion(time=0, amount=100, ii=24, addl=2) expect_equal(infusions2 %>% length(), 3) expect_equal(infusions1, infusions2) infusion1 <- Infusion(time=24, amount=100) infusion2 <- Infusion(time=24, amount=100, ii=24, addl=0) expect_equal(list(infusion1), infusion2) }) test_that("assertions on 'ii' and 'addl' work well", { expect_error(Bolus(time=c(0), amount=100, ii=24), regexp="addl can't be NULL if ii is specified") expect_error(Infusion(time=c(0), amount=100, ii=24), regexp="addl can't be NULL if ii is specified") expect_error(Bolus(time=c(0), amount=100, addl=0), regexp="ii can't be NULL if addl is specified") expect_error(Bolus(time=c(24,48), amount=100, ii=24, addl=0), regexp="time must be a single numeric value if used with ii and addl") expect_error(Bolus(time=0, amount=100, ii=24, addl=-2), regexp="addl must be positive") expect_error(Bolus(time=0, amount=100, ii=-2, addl=2), regexp="ii must be higher than 0") expect_error(Bolus(time=0, amount=100, ii=24, addl=5.2), regexp="addl must be a single integer value") expect_error(Bolus(time=0, amount=100, ii=c(24,48), addl=2), regexp="ii must be a single numeric value") })