## ---- test-mc-beta lapply( X = 1, FUN = function(i, text, tol) { message(text) phi <- matrix( data = c( -0.357, 0.771, -0.450, 0.0, -0.511, 0.729, 0, 0, -0.693 ), nrow = 3 ) colnames(phi) <- rownames(phi) <- c("x", "m", "y") vcov_phi_vec <- matrix( data = c( 0.002704274, -0.001475275, 0.000949122, -0.001619422, 0.000885122, -0.000569404, 0.00085493, -0.000465824, 0.000297815, -0.001475275, 0.004428442, -0.002642303, 0.000980573, -0.00271817, 0.001618805, -0.000586921, 0.001478421, -0.000871547, 0.000949122, -0.002642303, 0.006402668, -0.000697798, 0.001813471, -0.004043138, 0.000463086, -0.001120949, 0.002271711, -0.001619422, 0.000980573, -0.000697798, 0.002079286, -0.001152501, 0.000753, -0.001528701, 0.000820587, -0.000517524, 0.000885122, -0.00271817, 0.001813471, -0.001152501, 0.00342605, -0.002075005, 0.000899165, -0.002532849, 0.001475579, -0.000569404, 0.001618805, -0.004043138, 0.000753, -0.002075005, 0.004984032, -0.000622255, 0.001634917, -0.003705661, 0.00085493, -0.000586921, 0.000463086, -0.001528701, 0.000899165, -0.000622255, 0.002060076, -0.001096684, 0.000686386, -0.000465824, 0.001478421, -0.001120949, 0.000820587, -0.002532849, 0.001634917, -0.001096684, 0.003328692, -0.001926088, 0.000297815, -0.000871547, 0.002271711, -0.000517524, 0.001475579, -0.003705661, 0.000686386, -0.001926088, 0.004726235 ), nrow = 9 ) delta_t <- 2 answer <- as.vector( expm::expm(delta_t * phi) ) mc <- MCBeta( phi = phi, vcov_phi_vec = vcov_phi_vec, delta_t = delta_t, R = 1000, seed = 42 ) testthat::test_that( paste(text, "MCBeta"), { testthat::expect_true( all( ( answer - summary(mc)$est ) <= tol ) ) } ) mc <- MCBeta( phi = phi, vcov_phi_vec = vcov_phi_vec, delta_t = 1:5, R = 1000, seed = NULL, test_phi = FALSE ) print(mc) summary(mc) confint(mc, level = 0.95) plot(mc) mc <- MCBeta( phi = phi, vcov_phi_vec = vcov_phi_vec, delta_t = 1, R = 1000, seed = NULL, test_phi = FALSE ) print(mc) summary(mc) confint(mc, level = 0.95) testthat::test_that( paste(text, "plot error"), { testthat::expect_error( plot(mc) ) } ) }, text = "test-mc-beta", tol = 0.00001 )