* using log directory 'd:/RCompile/CRANincoming/R-devel/bulkQC.Rcheck' * using R Under development (unstable) (2024-04-23 r86473 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bulkQC/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bulkQC' version '1.1' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Joseph Rigdon ' New submission Possibly misspelled words in DESCRIPTION: Multicenter (9:14) Rigdon (9:370) al (9:380) covariate (9:305) et (9:377) multicenter (4:9) univariate (9:243) The Title field should be in title case. Current version is: 'Quality control and outlier identification in bulk for multicenter trials' In title case that is: 'Quality Control and Outlier Identification in Bulk for Multicenter Trials' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'bulkQC' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'site_outliers.Rd': \usage lines wider than 90 characters: site_outliers(d0, exclude = c("pid"), siteID = "site", covs = c("age"), threshG = 0.001, thresh2 = 0.05, threshS = 0.5, n_uniq = 10, n_ ... [TRUNCATED] These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... OK * DONE Status: 2 NOTEs