* using log directory 'd:/RCompile/CRANincoming/R-devel/bulkQC.Rcheck'
* using R Under development (unstable) (2024-04-23 r86473 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'bulkQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bulkQC' version '1.1'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Joseph Rigdon <jrigdon@wakehealth.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  Multicenter (9:14)
  Rigdon (9:370)
  al (9:380)
  covariate (9:305)
  et (9:377)
  multicenter (4:9)
  univariate (9:243)

The Title field should be in title case. Current version is:
'Quality control and outlier identification in bulk for multicenter trials'
In title case that is:
'Quality Control and Outlier Identification in Bulk for Multicenter Trials'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'bulkQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ind_multi: no visible global function definition for 'predict'
site_outliers: no visible global function definition for 'lm'
site_outliers: no visible global function definition for 'anova'
site_outliers: no visible global function definition for 't.test'
Undefined global functions or variables:
  anova lm predict t.test
Consider adding
  importFrom("stats", "anova", "lm", "predict", "t.test")
to your NAMESPACE file.
* checking Rd files ... WARNING
./man/bulkQC-package.Rd: non-ASCII input and no declared encoding
./man/site_outliers.Rd: non-ASCII input and no declared encoding
problems found in 'bulkQC-package.Rd', 'site_outliers.Rd'
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'site_outliers.Rd':
  \usage lines wider than 90 characters:
     site_outliers(d0, exclude = c("pid"), siteID = "site", covs = c("age"), threshG = 0.001, thresh2 = 0.05, threshS = 0.5, n_uniq = 10, n_ ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs