test_that("analyze_diversity creates diversity plots and tables", { obj <- create_curated_test_object() obj <- transform_curated_data(obj) obj <- analyze_social_behavior(obj) obj <- analyze_diversity(obj) expect_true(!is.null(obj@graficos$diversity_gen_plot)) expect_s3_class(obj@graficos$diversity_gen_plot, "ggplot") expect_true(!is.null(obj@resultados_analisis$diversity_gen_table)) expect_s3_class(obj@graficos$diversity_gr_plot, "ggplot") expect_true(!is.null(obj@resultados_analisis$diversity_gr_table)) expect_equal(obj@graficos$diversity_gr_plot$labels$x, "Species richness in consortium") }) test_that("analyze_diversity no longer produces Top-k slots", { obj <- create_curated_test_object() obj <- transform_curated_data(obj) obj <- analyze_social_behavior(obj) obj <- analyze_diversity(obj) expect_null(obj@resultados_analisis$diversity_best_gen_table) expect_null(obj@resultados_analisis$diversity_best_gr_table) expect_null(obj@graficos$diversity_best_gen_plot) expect_null(obj@graficos$diversity_best_gr_plot) }) test_that("diversity boxplot x-axis reads 'Species richness in consortium'", { obj <- create_curated_test_object() obj <- transform_curated_data(obj) obj <- analyze_social_behavior(obj) obj <- analyze_diversity(obj) p <- obj@graficos$diversity_gen_plot expect_equal(p$labels$x, "Species richness in consortium") })