* using log directory ‘/srv/hornik/tmp/CRAN_pretest/bruceR.Rcheck’
* using R Under development (unstable) (2025-11-23 r89052)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.5 (1)
    Debian flang version 21.1.5 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘bruceR/DESCRIPTION’ ... OK
* this is package ‘bruceR’ version ‘2025.11’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/9s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bruceR’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in Rd file 'bruceR-package.Rd':
  ‘`%^%’ ‘`%notin%’ ‘`%allin%’ ‘`%anyin%’ ‘`%nonein%’ ‘`%partin%’

Missing link(s) in Rd file 'grapes-allin-grapes.Rd':
  ‘`%anyin%’ ‘`%nonein%’ ‘`%partin%’

Missing link(s) in Rd file 'grapes-anyin-grapes.Rd':
  ‘`%allin%’ ‘`%nonein%’ ‘`%partin%’

Missing link(s) in Rd file 'grapes-nonein-grapes.Rd':
  ‘`%allin%’ ‘`%anyin%’ ‘`%partin%’

Missing link(s) in Rd file 'grapes-partin-grapes.Rd':
  ‘`%allin%’ ‘`%anyin%’ ‘`%nonein%’

See section 'Cross-references' in the 'Writing R Extensions' manual.

Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  bruceR-package.Rd: `%^%, `%notin%, `%allin%, `%anyin%, `%nonein%,
    `%partin%
  grapes-allin-grapes.Rd: `%anyin%, `%nonein%, `%partin%
  grapes-anyin-grapes.Rd: `%allin%, `%nonein%, `%partin%
  grapes-nonein-grapes.Rd: `%allin%, `%anyin%, `%partin%
  grapes-partin-grapes.Rd: `%allin%, `%anyin%, `%nonein%
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [15s/15s] OK
* checking PDF version of manual ... [5s/5s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.86 ...{}\Rpercent{}}{`.Rpcent..Rcaret..Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.86 ...{}\Rpercent{}}{`.Rpcent..Rcaret..Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.86 ...{}\Rpercent{}}{`.Rpcent..Rcaret..Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.86 ...{}\Rpercent{}}{`.Rpcent..Rcaret..Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.86 ...{}\Rpercent{}}{`.Rpcent..Rcaret..Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.87 ...notin\Rpercent{}}{`.Rpcent.notin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.87 ...notin\Rpercent{}}{`.Rpcent.notin.Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.87 ...notin\Rpercent{}}{`.Rpcent.notin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.87 ...notin\Rpercent{}}{`.Rpcent.notin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.87 ...notin\Rpercent{}}{`.Rpcent.notin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.88 ...allin\Rpercent{}}{`.Rpcent.allin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.88 ...allin\Rpercent{}}{`.Rpcent.allin.Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.88 ...allin\Rpercent{}}{`.Rpcent.allin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.88 ...allin\Rpercent{}}{`.Rpcent.allin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.88 ...allin\Rpercent{}}{`.Rpcent.allin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.89 ...anyin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.89 ...anyin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.89 ...anyin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.89 ...anyin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.89 ...anyin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.90 ...nein\Rpercent{}}{`.Rpcent.nonein.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.90 ...nein\Rpercent{}}{`.Rpcent.nonein.Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.90 ...nein\Rpercent{}}{`.Rpcent.nonein.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.90 ...nein\Rpercent{}}{`.Rpcent.nonein.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.90 ...nein\Rpercent{}}{`.Rpcent.nonein.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.91 ...rtin\Rpercent{}}{`.Rpcent.partin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.91 ...rtin\Rpercent{}}{`.Rpcent.partin.Rpcent.}}
                                                  
! Undefined control sequence.
<argument> Rfn.\global \let \T1\textasciigrave 
                                               \protect \begingroup \def \Me...
l.91 ...rtin\Rpercent{}}{`.Rpcent.partin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.91 ...rtin\Rpercent{}}{`.Rpcent.partin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@testname.
<to be read again> 
                   1
l.91 ...rtin\Rpercent{}}{`.Rpcent.partin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.4209 ...yin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Illegal parameter number in definition of \Hy@tempb.
<to be read again> 
                   1
l.4209 ...yin\Rpercent{}}{`.Rpcent.anyin.Rpcent.}}
                                                  
! Incomplete \iffalse; all text was ignored after line 4209.
<inserted text> 
                \fi 
<*> \input ./Rd2.tex
                    
! Emergency stop.
<*> \input ./Rd2.tex
                    
*** (job aborted, no legal \end found)

!  ==> Fatal error occurred, no output PDF file produced!
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘bruceR-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 1 NOTE