context("survival-survreg") skip_on_cran() skip_if_not_installed("modeltests") library(modeltests) skip_if_not_installed("survival") library(survival) sr <- survreg(Surv(futime, fustat) ~ ecog.ps + rx, ovarian, dist = "exponential" ) test_that("survreg tidier arguments", { check_arguments(tidy.survreg) check_arguments(glance.survreg) check_arguments(augment.survreg) }) test_that("tidy.survreg", { td <- tidy(sr) td2 <- tidy(sr, conf.int = TRUE) check_tidy_output(td) check_tidy_output(td2) check_dims(td, 3, 5) check_dims(td2, 3, 7) expect_equal(td$term, c("(Intercept)", "ecog.ps", "rx")) expect_equal(td2$term, c("(Intercept)", "ecog.ps", "rx")) }) test_that("glance.survreg", { gl <- glance(sr) check_glance_outputs(gl) }) test_that("augment.survreg", { check_augment_function( aug = augment.survreg, model = sr, data = ovarian, newdata = ovarian ) }) test_that("tidy.survreg with robust std err", { sr <- survreg(Surv(futime, fustat) ~ ecog.ps + rx, ovarian, dist = "exponential", robust = TRUE ) td <- tidy(sr) td2 <- tidy(sr, conf.int = TRUE) check_tidy_output(td) check_tidy_output(td2) check_dims(td, 3, 5) check_dims(td2, 3, 7) })