* using log directory ‘/srv/hornik/tmp/CRAN_pretest/broom.Rcheck’
* using R Under development (unstable) (2025-12-01 r89083)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.5 (1)
    Debian flang version 21.1.5 (1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘broom/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘broom’ version ‘1.0.11’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [7s/14s] NOTE
Maintainer: ‘Emil Hvitfeldt <emil.hvitfeldt@posit.co>’

New maintainer:
  Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Old maintainer(s):
  Simon Couch <simon.couch@posit.co>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘broom’ can be installed ... [5s/5s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [111s/112s] ERROR
Running examples in ‘broom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tidy.rcorr
> ### Title: Tidy a(n) rcorr object
> ### Aliases: tidy.rcorr rcorr_tidiers Hmisc_tidiers
> 
> ### ** Examples
> 
> ## Don't show: 
> if (rlang::is_installed(c("Hmisc", "ggplot2"))) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ 
+ # load libraries for models and data
+ library(Hmisc)
+ 
+ mat <- replicate(52, rnorm(100))
+ 
+ # add some NAs
+ mat[sample(length(mat), 2000)] <- NA
+ 
+ # also, column names
+ colnames(mat) <- c(LETTERS, letters)
+ 
+ # fit model
+ rc <- rcorr(mat)
+ 
+ # summarize model fit with tidiers  + visualization
+ td <- tidy(rc)
+ td
+ 
+ library(ggplot2)
+ ggplot(td, aes(p.value)) +
+   geom_histogram(binwidth = .1)
+ 
+ ggplot(td, aes(estimate, p.value)) +
+   geom_point() +
+   scale_y_log10()
+ ## Don't show: 
+ }) # examplesIf
> library(Hmisc)

Attaching package: ‘Hmisc’

The following objects are masked from ‘package:base’:

    format.pval, units

> mat <- replicate(52, rnorm(100))
> mat[sample(length(mat), 2000)] <- NA
> colnames(mat) <- c(LETTERS, letters)
> rc <- rcorr(mat)

fatal Fortran runtime error(/tmp/Rtmp4LgvFI/R.INSTALLc67361f40b959/Hmisc/src/rcorr.f90:33): Internal error: RUNTIME_CHECK(maskType && maskType->first == TypeCategory::Logical) failed at flang/runtime/transformational.cpp(639)
Aborted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/9s] OK
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [9s/9s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [8s/8s] OK
* checking PDF version of manual ... [13s/13s] OK
* checking HTML version of manual ... [15s/15s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE