test_that("tidy_disambiguate_terms() changes nothing for basic models", { mod <- glm(response ~ stage + grade + trt, gtsummary::trial, family = binomial) res <- mod %>% tidy_and_attach() %>% tidy_identify_variables() # no change by default res2 <- res %>% tidy_disambiguate_terms() expect_equivalent(res, res2) expect_false("original_term" %in% names(res2)) }) test_that("tidy_disambiguate_terms() works for mixed models", { skip_on_cran() skip_if_not_installed("lme4") mod <- lme4::lmer(Reaction ~ Days + (Days | Subject), lme4::sleepstudy) skip_if_not_installed("broom.mixed") res <- mod %>% tidy_and_attach() %>% tidy_disambiguate_terms(sep = ".") expect_equivalent( res$term, c( "(Intercept)", "Days", "Subject.sd__(Intercept)", "Subject.cor__(Intercept).Days", "Subject.sd__Days", "Residual.sd__Observation" ) ) expect_true("original_term" %in% names(res)) res <- mod %>% tidy_and_attach() %>% tidy_disambiguate_terms(sep = "_") expect_equivalent( res$term, c( "(Intercept)", "Days", "Subject_sd__(Intercept)", "Subject_cor__(Intercept).Days", "Subject_sd__Days", "Residual_sd__Observation" ) ) }) test_that("test tidy_disambiguate_terms() checks", { skip_on_cran() skip_if_not_installed("lme4") skip_if_not_installed("broom.mixed") mod <- lme4::lmer(Reaction ~ Days + (Days | Subject), lme4::sleepstudy) # expect an error if no model attached expect_error(mod %>% broom.mixed::tidy() %>% tidy_disambiguate_terms()) # could be apply twice (no error but a message) expect_error( mod %>% tidy_and_attach() %>% tidy_disambiguate_terms() %>% tidy_disambiguate_terms(), NA ) expect_message( mod %>% tidy_and_attach(tidy_fun = broom::tidy) %>% tidy_disambiguate_terms() %>% tidy_disambiguate_terms() ) expect_message( mod %>% tidy_and_attach(tidy_fun = broom::tidy) %>% tidy_disambiguate_terms() %>% tidy_disambiguate_terms(quiet = TRUE), NA ) })