Package: BayesianTools
Check: examples
New result: ERROR
  Running examples in ‘BayesianTools-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: bridgesample
  > ### Title: Calculates the marginal likelihood of a chain via bridge
  > ###   sampling
  > ### Aliases: bridgesample
  > ### Keywords: internal
  > 
  > ### ** Examples
  > 
  > means <- c(0, 1, 2)
  > sds <- c(1, 0.6, 3)
  > 
  > # log-likelihood
  > ll <- function (x) {
  +   return(sum(dnorm(x, mean = means, sd = sds, log = TRUE)))
  + }
  > 
  > # lower and upper bounds for prior
  > lb <- rep(-10, 3)
  > ub <- rep(10, 3)
  > 
  > # create setup and run MCMC
  > setup <- createBayesianSetup(likelihood = ll,
  +                              lower = lb,
  +                              upper = ub)
  > 
  > out <- runMCMC(bayesianSetup = setup,
  +                settings = list(iterations = 1000),
  +                sampler = "DEzs")
  
   Running DEzs-MCMC, chain  1 iteration 300 of 1002 . Current logp  -13.45132 -14.0386 -12.89206 . Please wait! 
  
   Running DEzs-MCMC, chain  1 iteration 600 of 1002 . Current logp  -14.01405 -13.97087 -14.01756 . Please wait! 
  
   Running DEzs-MCMC, chain  1 iteration 900 of 1002 . Current logp  -13.0555 -13.32697 -12.47774 . Please wait! 
  
   Running DEzs-MCMC, chain  1 iteration 1002 of 1002 . Current logp  -13.8484 -14.97426 -13.62142 . Please wait! 
  runMCMC terminated after 0.0979999999999999seconds
  > 
  > # sample from MCMC output with "burn-in" of 25%
  > sample <- getSample(out$chain, start = 250, numSamples = 500)
  > 
  > # use bridge sampling to get marginal likelihood
  > bs_result <- bridgesample(chain = sample,
  +                           nParams = out$setup$numPars,
  +                           lower = lb,
  +                           upper = ub,
  +                           posterior = out$setup$posterior$density)
  Iteration: 1
  Error in loadNamespace(x) : there is no package called ‘posterior’
  Calls: bridgesample ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
  Execution halted