Package: braidReports
Check: examples
New result: ERROR
  Running examples in ‘braidReports-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: calculateIAE
  > ### Title: Calculate the Index of Achievable Efficacy
  > ### Aliases: calculateIAE
  > ### Keywords: misc
  > 
  > ### ** Examples
  > 
  > data(es8analysis)
  > bfit <- es8analysis$braidFit
  > # Modelled effect is base-10 logarithm of cell survival relative to negative controls,
  > # so a level of -2 reflects 99% cell killing
  > calculateIAE(bfit$fullpar,c(-1,-2),c(1.015*10^-6,5*10^-5))
  Error in evalBRAIDrsm(sc1, sc2, parv) : 
    could not find function "evalBRAIDrsm"
  Calls: calculateIAE
  Execution halted

Package: braidReports
Check: R code for possible problems
New result: NOTE
  calculateIAE: no visible global function definition for ‘evalBRAIDrsm’
  makeBRAIDreport: no visible global function definition for
    ‘evalBRAIDrsm’
  makeBRAIDreport: no visible global function definition for
    ‘calcBRAIDconfint’
  makeBRAIDreport : <anonymous>: no visible global function definition
    for ‘invertBRAIDrsm’
  potentiationPlot: no visible global function definition for
    ‘calcBRAIDconfint’
  potentiationPlot : <anonymous>: no visible global function definition
    for ‘evalBRAIDrsm’
  potentiationPlot: no visible global function definition for
    ‘evalBRAIDrsm’
  Undefined global functions or variables:
    calcBRAIDconfint evalBRAIDrsm invertBRAIDrsm

Package: braidReports
Check: Rd cross-references
Old result: NOTE
  Found the following Rd file(s) with Rd \link{} targets missing package
  anchors:
    braidReports-package.Rd: braidrm-package
    es8analysis.Rd: es8olatmz, runBRAIDanalysis
    makeBRAIDreport.Rd: runBRAIDanalysis, scale_fill_gradientn,
      geom_point, geom_line
    potentiationPlot.Rd: geom_ribbon, geom_point, geom_line, geom_hline
    voronoi.Rd: geom_polygon
  Please provide package anchors for all Rd \link{} targets not in the
  package itself and the base packages.
New result: WARNING
  Missing link or links in Rd file 'braidReports-package.Rd':
    ‘braidrm-package’
  
  Missing link or links in Rd file 'es8analysis.Rd':
    ‘es8olatmz’ ‘runBRAIDanalysis’
  
  Missing link or links in Rd file 'makeBRAIDreport.Rd':
    ‘runBRAIDanalysis’
  
  See section 'Cross-references' in the 'Writing R Extensions' manual.
  
  Found the following Rd file(s) with Rd \link{} targets missing package
  anchors:
    braidReports-package.Rd: braidrm-package
    es8analysis.Rd: es8olatmz, runBRAIDanalysis
    makeBRAIDreport.Rd: runBRAIDanalysis, scale_fill_gradientn,
      geom_point, geom_line
    potentiationPlot.Rd: geom_ribbon, geom_point, geom_line, geom_hline
    voronoi.Rd: geom_polygon
  Please provide package anchors for all Rd \link{} targets not in the
  package itself and the base packages.