downloading reverse dependencies ‘IVPP’, ‘powerly’, ‘EMgaussian’, ‘NetworkComparisonTest’ trying URL 'file:///data/Repositories/CRAN/src/contrib/IVPP_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/powerly_1.10.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EMgaussian_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/NetworkComparisonTest_2.2.2.tar.gz' installing dependencies ‘BDgraph’, ‘bootnet’, ‘cglasso’, ‘graphicalVAR’, ‘IsingFit’, ‘IsingSampler’, ‘mgm’, ‘NetworkToolbox’, ‘networktools’, ‘parabar’, ‘psychonetrics’, ‘relaimpo’ also installing the dependencies ‘eigenmodel’, ‘VCA’ begin installing package ‘eigenmodel’ begin installing package ‘VCA’ begin installing package ‘IsingFit’ begin installing package ‘IsingSampler’ begin installing package ‘mgm’ begin installing package ‘BDgraph’ begin installing package ‘graphicalVAR’ begin installing package ‘relaimpo’ begin installing package ‘parabar’ begin installing package ‘cglasso’ * installing *source* package ‘eigenmodel’ ... ** this is package ‘eigenmodel’ version ‘1.12’ ** package ‘eigenmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eigenmodel) begin installing package ‘networktools’ * installing *source* package ‘IsingFit’ ... ** this is package ‘IsingFit’ version ‘0.4’ ** package ‘IsingFit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsingFit) begin installing package ‘NetworkToolbox’ * installing *source* package ‘relaimpo’ ... ** this is package ‘relaimpo’ version ‘2.2-7’ ** package ‘relaimpo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (relaimpo) * installing *source* package ‘parabar’ ... ** this is package ‘parabar’ version ‘1.4.2’ ** package ‘parabar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parabar) * installing *source* package ‘VCA’ ... ** this is package ‘VCA’ version ‘1.5.2’ ** package ‘VCA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAfsBfM/R.INSTALL305be2a121126/VCA/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c vca.f95 -o vca.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o VCA.so init.o vca.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAfsBfM/R.INSTALL305be2a121126/VCA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-VCA/00new/VCA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VCA) * installing *source* package ‘cglasso’ ... ** this is package ‘cglasso’ version ‘2.0.7’ ** package ‘cglasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOdXCgk/R.INSTALL305cdb294664/cglasso/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c Find_ConnectedComp.f90 -o Find_ConnectedComp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FortranR_interface.c -o FortranR_interface.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cggm_v1.f90 -o cggm_v1.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cggm_v2.f90 -o cggm_v2.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cglasso_v1.f90 -o cglasso_v1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cglasso_v1_trace.c -o cglasso_v1_trace.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cglasso_v2.f90 -o cglasso_v2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cglasso_v2_trace.c -o cglasso_v2_trace.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dfs.f90 -o dfs.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c e_step_v2.f90 -o e_step_v2.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitmcgm.f90 -o fitmcgm.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c glasso_bcd.f90 -o glasso_bcd.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glasso_trace.c -o glasso_trace.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c glassosub.f90 -o glassosub.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c impute.f90 -o impute.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c inv.f90 -o inv.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lasso.f90 -o lasso.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lasso_h.f90 -o lasso_h.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c multilasso.f90 -o multilasso.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c predict.f90 -o predict.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c setup.f90 -o setup.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cglasso.so Find_ConnectedComp.o FortranR_interface.o cggm_v1.o cggm_v2.o cglasso_v1.o cglasso_v1_trace.o cglasso_v2.o cglasso_v2_trace.o dfs.o e_step_v2.o fitmcgm.o glasso_bcd.o glasso_trace.o glassosub.o impute.o init.o inv.o lasso.o lasso_h.o multilasso.o predict.o setup.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOdXCgk/R.INSTALL305cdb294664/cglasso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cglasso/00new/cglasso/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cglasso) * installing *source* package ‘mgm’ ... ** this is package ‘mgm’ version ‘1.2-15’ ** package ‘mgm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mgm) * installing *source* package ‘networktools’ ... ** this is package ‘networktools’ version ‘1.6.0’ ** package ‘networktools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (networktools) * installing *source* package ‘NetworkToolbox’ ... ** this is package ‘NetworkToolbox’ version ‘1.4.4’ ** package ‘NetworkToolbox’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NetworkToolbox) * installing *source* package ‘IsingSampler’ ... ** this is package ‘IsingSampler’ version ‘0.2.4’ ** package ‘IsingSampler’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYzxt0n/R.INSTALL305ba3e35c7d6/IsingSampler/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c IsingCpp_CFTP.cpp -o IsingCpp_CFTP.o IsingCpp_CFTP.cpp: In function ‘Rcpp::NumericVector Broderick2013(Rcpp::IntegerMatrix, int, int, int, Rcpp::IntegerVector)’: IsingCpp_CFTP.cpp:639:7: warning: unused variable ‘N’ [-Wunused-variable] 639 | int N = x.nrow(); | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PseudoLikelihood.cpp -o PseudoLikelihood.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o IsingSampler.so IsingCpp_CFTP.o PseudoLikelihood.o RcppExports.o -L/home/hornik/tmp/R/lib -lR 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYzxt0n/R.INSTALL305ba3e35c7d6/IsingSampler/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-IsingSampler/00new/IsingSampler/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsingSampler) begin installing package ‘psychonetrics’ begin installing package ‘bootnet’ * installing *source* package ‘graphicalVAR’ ... ** this is package ‘graphicalVAR’ version ‘0.3.4’ ** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF1rvaO/R.INSTALL305c75e60ccac/graphicalVAR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Rothmana.cpp -o Rothmana.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o graphicalVAR.so RcppExports.o Rothmana.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF1rvaO/R.INSTALL305c75e60ccac/graphicalVAR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-graphicalVAR/00new/graphicalVAR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graphicalVAR) * installing *source* package ‘bootnet’ ... ** this is package ‘bootnet’ version ‘1.7.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bootnet) * installing *source* package ‘BDgraph’ ... ** this is package ‘BDgraph’ version ‘2.74’ ** package ‘BDgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUCSDb2/R.INSTALL305c5f654a4d/BDgraph/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BDgraph_init.c -o BDgraph_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c copula.cpp -o copula.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_DMH.cpp -o gcgm_DMH.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_bd.cpp -o gcgm_bd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gcgm_dw_bd.cpp -o gcgm_dw_bd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_DMH.cpp -o ggm_DMH.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_bd.cpp -o ggm_bd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ggm_mpl_bd.cpp -o ggm_mpl_bd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_mpl_Hill_Climb.cpp -o gm_mpl_Hill_Climb.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_mpl_bd_dis.cpp -o gm_mpl_bd_dis.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c gm_rj.cpp -o gm_rj.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c omp_set_num_cores.cpp -o omp_set_num_cores.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rgwish.cpp -o rgwish.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tgm_bd.cpp -o tgm_bd.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BDgraph.so BDgraph_init.o copula.o gcgm_DMH.o gcgm_bd.o gcgm_dw_bd.o ggm_DMH.o ggm_bd.o ggm_mpl_bd.o gm_mpl_Hill_Climb.o gm_mpl_bd_dis.o gm_rj.o matrix.o omp_set_num_cores.o rgwish.o tgm_bd.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUCSDb2/R.INSTALL305c5f654a4d/BDgraph/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BDgraph/00new/BDgraph/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BDgraph) * installing *source* package ‘psychonetrics’ ... ** this is package ‘psychonetrics’ version ‘0.13.2’ ** package ‘psychonetrics’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVtU8uk/R.INSTALL308c92a8831fa/psychonetrics/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 02_algebrahelpers_RcppHelpers.cpp -o 02_algebrahelpers_RcppHelpers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 02_algebrahelpers_kronecker.cpp -o 02_algebrahelpers_kronecker.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 02_algebrahelpers_modelMatrix_cpp.cpp -o 02_algebrahelpers_modelMatrix_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 03_modelformation_formModelMatrices_cpp.cpp -o 03_modelformation_formModelMatrices_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 03_modelformation_impliedcovstructures.cpp -o 03_modelformation_impliedcovstructures.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 03_modelinformation_sparseordense_cpp.cpp -o 03_modelinformation_sparseordense_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalFit_FisherInformation_cpp.cpp -o 04_generalFit_FisherInformation_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalFit_gradient_cpp.cpp -o 04_generalFit_gradient_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalfit_fitfunction_cpp.cpp -o 04_generalfit_fitfunction_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalfit_implied_and_prepare.cpp -o 04_generalfit_implied_and_prepare.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 04_generalfit_psychonetrics_BFGS.cpp -o 04_generalfit_psychonetrics_BFGS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 05_MLestimator_expected_Hessian_Gauss_cpp.cpp -o 05_MLestimator_expected_Hessian_Gauss_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 05_MLestimator_fit_Gauss_cpp.cpp -o 05_MLestimator_fit_Gauss_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 05_MLestimator_fit_Ising.cpp -o 05_MLestimator_fit_Ising.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 05_MLestimator_gradient_Gauss_cpp.cpp -o 05_MLestimator_gradient_Gauss_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 05_MLestimator_gradient_Ising_cpp.cpp -o 05_MLestimator_gradient_Ising_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 06_DWLS_Wmat.cpp -o 06_DWLS_Wmat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 06_ULS_expectedHessian_cpp.cpp -o 06_ULS_expectedHessian_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 06_ULS_fitfunction_cpp.cpp -o 06_ULS_fitfunction_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 06_ULS_gradient_cpp.cpp -o 06_ULS_gradient_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 06_WLS_Wmat.cpp -o 06_WLS_Wmat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 07_FIMLestimator_expected_hessian_gauss_cppversion.cpp -o 07_FIMLestimator_expected_hessian_gauss_cppversion.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 07_FIMLestimator_fitfunction_cppversion.cpp -o 07_FIMLestimator_fitfunction_cppversion.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 07_FIMLestimator_jacobian_gauss.cpp -o 07_FIMLestimator_jacobian_gauss.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 10_ordinal_covPrepare.cpp -o 10_ordinal_covPrepare.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 10_ordinal_cppFuns.cpp -o 10_ordinal_cppFuns.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 14_varcov_derivatives_cpp.cpp -o 14_varcov_derivatives_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 14_varcov_implied_cpp.cpp -o 14_varcov_implied_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 14_varcov_prepare_cpp.cpp -o 14_varcov_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 15_lvm_derivatives_cpp.cpp -o 15_lvm_derivatives_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 15_lvm_implied_cpp.cpp -o 15_lvm_implied_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 15_lvm_prepare_cpp.cpp -o 15_lvm_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 16_var1_derivatives_cpp.cpp -o 16_var1_derivatives_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 16_var1_implied_cpp.cpp -o 16_var1_implied_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 16_var1_prepare_cpp.cpp -o 16_var1_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 18_dlvm1_derivatives_cpp.cpp -o 18_dlvm1_derivatives_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 18_dlvm1_implied_cpp.cpp -o 18_dlvm1_implied_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 18_dlvm1_prepare_cpp.cpp -o 18_dlvm1_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 19_tsdlvm1_derivatives.cpp -o 19_tsdlvm1_derivatives.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 19_tsdlvm1_implied_cpp.cpp -o 19_tsdlvm1_implied_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 19_tsdlvm1_prepare_cpp.cpp -o 19_tsdlvm1_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 20_meta_varcov_derivatives_cpp.cpp -o 20_meta_varcov_derivatives_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 20_meta_varcov_implied.cpp -o 20_meta_varcov_implied.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 20_meta_varcov_prepare_cpp.cpp -o 20_meta_varcov_prepare_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 21_Ising_derivatives.cpp -o 21_Ising_derivatives.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 21_Ising_expectedHessian.cpp -o 21_Ising_expectedHessian.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 21_Ising_helperfunctions.cpp -o 21_Ising_helperfunctions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/pbv/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c 21_Ising_implied_cpp.cpp -o 21_Ising_implied_cpp.o 21_Ising_implied_cpp.cpp: In function ‘Rcpp::List implied_Ising_cpp(const Rcpp::S4&, bool)’: 21_Ising_implied_cpp.cpp:40:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 40 | for (i=0;i= 3.0.0) Imports: methods, igraph, IsingFit (>= 0.4), qgraph, dplyr (>= 0.3.0.2), tidyr, gtools, corpcor, IsingSampler (>= 0.2.3), mvtnorm, abind, Matrix, snow, mgm (>= 1.2), NetworkToolbox (>= 1.1.0), pbapply, networktools, rlang, tibble, tidyselect Timings: user system elapsed bootnet 89.408 8.489 98.878 Results: Check status summary: OK Source packages 1 Reverse depends 4 Check results summary: bootnet ... OK rdepends_EMgaussian ... OK rdepends_IVPP ... OK rdepends_NetworkComparisonTest ... OK rdepends_powerly ... OK Check results changes: Package: IVPP Check: package dependencies Old result: ERROR New result: OK Package: NetworkComparisonTest Check: examples Old result: ERROR New result: OK Package: powerly Check: package dependencies Old result: ERROR New result: OK