R version 4.5.0 beta (2025-03-27 r88067 ucrt) -- "How About a Twenty-Six" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(blit) > > test_check("blit") Running command (2025-03-29 12:46:29): d:\rtools45\usr\bin\perl.exe --help D:\RCompile\CRANincoming\R-devel\blit.Rcheck\tests\testthat>d:\rtools45\usr\bin\perl.exe --help Usage: /usr/bin/perl [switches] [--] [programfile] [arguments] -0[octal/hexadecimal] specify record separator (\0, if no argument) -a autosplit mode with -n or -p (splits $_ into @F) -C[number/list] enables the listed Unicode features -c check syntax only (runs BEGIN and CHECK blocks) -d[t][:MOD] run program under debugger or module Devel::MOD -D[number/letters] set debugging flags (argument is a bit mask or alphabets) -e commandline one line of program (several -e's allowed, omit programfile) -E commandline like -e, but enables all optional features -f don't do $sitelib/sitecustomize.pl at startup -F/pattern/ split() pattern for -a switch (//'s are optional) -g read all input in one go (slurp), rather than line-by-line (alias for -0777) -i[extension] edit <> files in place (makes backup if extension supplied) -Idirectory specify @INC/#include directory (several -I's allowed) -l[octnum] enable line ending processing, specifies line terminator -[mM][-]module execute "use/no module..." before executing program -n assume "while (<>) { ... }" loop around program -p assume loop like -n but print line also, like sed -s enable rudimentary parsing for switches after programfile -S look for programfile using PATH environment variable -t enable tainting warnings -T enable tainting checks -u dump core after parsing program -U allow unsafe operations -v print version, patchlevel and license -V[:configvar] print configuration summary (or a single Config.pm variable) -w enable many useful warnings -W enable all warnings -x[directory] ignore text before #!perl line (optionally cd to directory) -X disable all warnings Run 'perldoc perl' for more help with Perl. Command process finished Running command (2025-03-29 12:46:29): gzip -c D:\temp\2025_03_29_12_45_17_30491\RtmpGwTZ2y\file2667052f1475b | gzip -d > D:\temp\2025_03_29_12_45_17_30491\RtmpGwTZ2y\file2667042914942 Syntaxfehler. D:\RCompile\CRANincoming\R-devel\blit.Rcheck\tests\testthat>gzip -c D:\temp\2025_03_29_12_45_17_30491\RtmpGwTZ2y\file2667052f1475b | Command process finished blit is awesome \ [elapsed in 37ms] @ 2025-03-29 12:46:30 \ [elapsed in 63ms] @ 2025-03-29 12:46:30 \ [elapsed in 37ms] @ 2025-03-29 12:46:30 \ [elapsed in 50ms] @ 2025-03-29 12:46:30 [ FAIL 1 | WARN 2 | SKIP 11 | PASS 21 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • .Platform$OS.type == "windows" is TRUE (1): 'test-utils.R:20:5' • empty test (1): 'test-exec.R:35:1' • nzchar(Sys.which("alleleCounter")) is not TRUE (1): 'test-exec.R:2:5' • nzchar(Sys.which("cellranger")) is not TRUE (1): 'test-exec.R:7:5' • nzchar(Sys.which("fastq_pair")) is not TRUE (1): 'test-exec.R:12:5' • nzchar(Sys.which("gistic2")) is not TRUE (1): 'test-exec.R:17:5' • nzchar(Sys.which("kraken2")) is not TRUE (1): 'test-exec.R:31:5' • nzchar(Sys.which("python2")) || nzchar(Sys.which("python3")) is not TRUE (2): 'test-exec.R:22:5', 'test-exec.R:41:5' • nzchar(Sys.which("run-trust4")) is not TRUE (1): 'test-exec.R:53:5' • nzchar(Sys.which("seqkit")) is not TRUE (1): 'test-exec.R:48:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-exec.R:67:5'): `pipe()` method works well ────────────────────── Error in `normalizePath(path.expand(path), winslash, mustWork)`: path[1]="D:\temp\2025_03_29_12_45_17_30491\RtmpGwTZ2y\file2667042914942": Das System kann die angegebene Datei nicht finden Backtrace: ▆ 1. ├─testthat::expect_identical(read_lines(file), read_lines(file2)) at test-exec.R:67:5 2. │ └─testthat::quasi_label(enquo(expected), expected.label, arg = "expected") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─blit:::read_lines(file2) 5. └─getExportedValue("brio", "read_lines")(path, n = n) 6. └─base::normalizePath(path, mustWork = TRUE) [ FAIL 1 | WARN 2 | SKIP 11 | PASS 21 ] > > proc.time() user system elapsed 1.67 0.45 2.39