* using log directory ‘/srv/hornik/tmp/CRAN/bispdep.Rcheck’
* using R Under development (unstable) (2024-01-20 r85814)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘bispdep/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bispdep’ version ‘1.0-0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Carlos Melo <cmelo@udistrital.edu.co>’

New submission

Possibly misspelled words in DESCRIPTION:
  Getis (18:58)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘bispdep’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
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* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
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* checking S3 generic/method consistency ... OK
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* checking R code for possible problems ... [7s/7s] OK
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* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘bispdep-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: connectivity.map
> ### Title: Map of spatial connectivity
> ### Aliases: connectivity.map
> ### Keywords: spatial connectivity
> 
> ### ** Examples
> 
> library(spdep)
> columbus <- st_read(system.file("shapes/columbus.shp", package="spData")[1], quiet=TRUE)
> #Queen neighbours
> col_nbq1 <- poly2nb(columbus)             # queen, order 1
> col.lags10 <- nblag(col_nbq1, 10)         # queen, up to order 10
> connectivity.map(col.lags10[[1]],columbus,"COLUMBUS_I",obs=25,col="green",cex=0.5)
> 
> sf_obj <- st_centroid(st_geometry(columbus), of_largest_polygon)
> sp_obj <- as(sf_obj, "Spatial")
> coords <- st_coordinates(sf_obj)
> 
> col.k4 <- knn2nb(knearneigh(coords,4))
> connectivity.map(col.k4,columbus,"COLUMBUS_I",obs=25,col="green",cex=0.5)
> 
> suppressMessages(trinb <- tri2nb(coords))
Warning in sn2listw(df1) :
  style is M (missing); style should be set to a valid value
> connectivity.map(trinb,columbus,"COLUMBUS_I",obs=25,col="green",cex=0.5)
> 
> soinb=graph2nb(soi.graph(trinb,coords),sym=TRUE)
Error in soi.graph(trinb, coords) : dbscan required
Calls: graph2nb -> soi.graph
Execution halted
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* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE