* installing *source* package ‘birdie’ ... ** this is package ‘birdie’ version ‘0.8.0’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 23.1.0 (2)’ clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from RcppExports.cpp:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c bayes.cpp -o bayes.o In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from bayes.cpp:1: In file included from ./bayes.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c birdie.cpp -o birdie.o In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from birdie.cpp:2: In file included from ./birdie.h:6: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c gibbs.cpp -o gibbs.o In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from gibbs.cpp:1: In file included from ./gibbs.h:4: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from random.cpp:1: In file included from ./random.h:5: In file included from ./birdie_types.h:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ 17 warnings generated. clang++-23 -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -Wall -pedantic -mtune=native -c stanExports_multinom.cc -o stanExports_multinom.o In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:24: ../inst/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, const int n) { | ^ /usr/lib/gcc/x86_64-linux-gnu/16/../../../../include/c++/16/streambuf:756:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int') 756 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:24: ../inst/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, const int n) { | ^ /usr/lib/gcc/x86_64-linux-gnu/16/../../../../include/c++/16/streambuf:756:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'const int') 756 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:25: ../inst/include/rstan/stan_args.hpp:164:11: warning: unused variable 'calculated_thin' [-Wunused-variable] 164 | int calculated_thin; | ^~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:34: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:34: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:18: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob.hpp:290: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable] 74 | static constexpr const char* function = "student_t_qf"; | ^~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:52: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:8: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/optimization/bfgs.hpp:5: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/log_prob_propto.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/rev.hpp:16: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/prob.hpp:7: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable] 52 | const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val; | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable] 42 | const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0); | ^~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: ../inst/include/rstan/stan_fit.hpp:822:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 822 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:11: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/model_header.hpp:13: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing.hpp:13: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue_varmat.hpp:7: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:520:22: warning: unused variable 'rows' [-Wunused-variable] 520 | const Eigen::Index rows = row_idx.ns_.size(); | ^~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/model/indexing/rvalue.hpp:521:22: warning: unused variable 'cols' [-Wunused-variable] 521 | const Eigen::Index cols = col_idx.ns_.size(); | ^~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:32: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:3: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Cholesky:32: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Cholesky/LLT.h:240:14: warning: unused function template 'llt_rank_update_lower' [-Wunused-template] 240 | static Index llt_rank_update_lower(MatrixType& mat, const VectorType& vec, const typename MatrixType::RealScalar& sigma) | ^~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:32: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigenvalues:39: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:839:13: warning: unused function template 'tridiagonal_qr_step' [-Wunused-template] 839 | static void tridiagonal_qr_step(RealScalar* diag, RealScalar* subdiag, Index start, Index end, Scalar* matrixQ, Index n) | ^~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:55: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:18:13: warning: unused function template 'conservative_sparse_sparse_product_impl' [-Wunused-template] 18 | static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h:270:13: warning: unused function template 'sparse_sparse_to_dense_product_impl' [-Wunused-template] 270 | static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:56: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h:20:13: warning: unused function template 'sparse_sparse_product_with_pruning_impl' [-Wunused-template] 20 | static void sparse_sparse_product_with_pruning_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, const typename ResultType::RealScalar& tolerance) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:66: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Amd.h:35:21: warning: unused function template 'cs_wclear' [-Wunused-template] 35 | static StorageIndex cs_wclear (StorageIndex mark, StorageIndex lemax, StorageIndex *w, StorageIndex n) | ^~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:27: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/OrderingMethods:67: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Ordering.h:16: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:501:18: warning: unused function template 'init_rows_cols' [-Wunused-template] 501 | static IndexType init_rows_cols /* returns true if OK, or false otherwise */ | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:717:13: warning: unused function template 'init_scoring' [-Wunused-template] 717 | static void init_scoring | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:954:18: warning: unused function template 'find_ordering' [-Wunused-template] 954 | static IndexType find_ordering /* return the number of garbage collections */ | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1566:13: warning: unused function template 'detect_super_cols' [-Wunused-template] 1566 | static void detect_super_cols | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:1717:18: warning: unused function template 'garbage_collection' [-Wunused-template] 1717 | static IndexType garbage_collection /* returns the new value of pfree */ | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppEigen/include/Eigen/src/OrderingMethods/Eigen_Colamd.h:342:13: warning: unused function template 'compute_ordering' [-Wunused-template] 342 | static bool compute_ordering(IndexType n_row, IndexType n_col, IndexType Alen, IndexType *A, IndexType *p, double knobs[NKnobs], IndexType stats[NStats]) | ^~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:11: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/constraint.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/abs.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core.hpp:4: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/core/init_threadpool_tbb.hpp:18: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/task_arena.h:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/../oneapi/tbb/task_arena.h:27: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/../oneapi/tbb/detail/_task.h:89:13: warning: unused function template 'suspend_callback' [-Wunused-template] 89 | static void suspend_callback(void* user_callback, suspend_point sp) { | ^~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:23: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/ublas/vector.hpp:21: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/ublas/storage.hpp:27: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/numeric/ublas/traits.hpp:45:3: warning: unused function template 'boost_numeric_ublas_sqrt' [-Wunused-template] 45 | boost_numeric_ublas_sqrt (const T& t) { | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: In file included from ../inst/include/rstan/stan_fit.hpp:46: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:34: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/reduce_sum.hpp:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/parallel_reduce.h:17: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/../oneapi/tbb/parallel_reduce.h:27: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include/tbb/../oneapi/tbb/task_group.h:130:15: warning: unused function template 'task_ptr_or_nullptr' [-Wunused-template] 130 | d1::task* task_ptr_or_nullptr(F&& f){ | ^~~~~~~~~~~~~~~~~~~ In file included from stanExports_multinom.cc:5: In file included from ./stanExports_multinom.h:9: In file included from ../inst/include/rstan/rstaninc.hpp:5: ../inst/include/rstan/stan_fit.hpp:245:6: warning: unused function template 'get_indices_col2row' [-Wunused-template] 245 | void get_indices_col2row(const std::vector& dim, std::vector& midx, | ^~~~~~~~~~~~~~~~~~~ ../inst/include/rstan/stan_fit.hpp:281:6: warning: unused function template 'get_all_indices_col2row' [-Wunused-template] 281 | void get_all_indices_col2row(const std::vector >& dims, | ^~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/rstan/stan_fit.hpp:302:6: warning: unused function template 'print_vector' [-Wunused-template] 302 | void print_vector(const std::vector& v, std::ostream& o, | ^~~~~~~~~~~~ ../inst/include/rstan/stan_fit.hpp:313:6: warning: unused function template 'print_vector' [-Wunused-template] 313 | void print_vector(const std::vector& v, std::ostream& o, | ^~~~~~~~~~~~ ../inst/include/rstan/stan_fit.hpp:366:21: warning: unused function template 'unconstrained_to_constrained' [-Wunused-template] 366 | std::vector unconstrained_to_constrained(Model& model, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 warnings generated. clang++-23 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-clang-23/lib -Wl,-O1 -o birdie.so RcppExports.o bayes.o birdie.o gibbs.o random.o stanExports_multinom.o -L/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -latomic -lpthread -L/home/hornik/tmp/R-d-clang-23/lib -lR installing to /home/hornik/tmp/CRAN_pretest/birdie.Rcheck/00LOCK-birdie/00new/birdie/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (birdie)