downloading reverse dependencies ... downloading bioregion_1.2.0.tar.gz ... ok downloading bootPLS_1.0.1.tar.gz ... ok downloading cassandRa_0.2.0.tar.gz ... ok downloading econetwork_0.7.0.tar.gz ... ok downloading econullnetr_0.2.1.tar.gz ... ok downloading NIMAA_0.2.1.tar.gz ... ok downloading nos_2.0.0.tar.gz ... ok downloading PhageCocktail_1.0.3.tar.gz ... ok downloading plsRglm_1.5.1.tar.gz ... ok downloading RPANDA_2.4.tar.gz ... ok downloading tapnet_0.3.tar.gz ... ok downloading bipartiteD3_0.3.2.tar.gz ... ok downloading HiveR_0.4.0.tar.gz ... ok downloading leiden_0.4.3.1.tar.gz ... ok downloading plsRbeta_0.3.1.tar.gz ... ok downloading primer_1.2.0.tar.gz ... ok installing dependencies ‘bipartite’, ‘bnstruct’, ‘chemometrics’, ‘fastkmedoids’, ‘graphsim’, ‘GUniFrac’, ‘MPSEM’, ‘multinet’, ‘multiplex’, ‘mvMORPH’, ‘phaseR’, ‘plsdepot’, ‘plsdof’, ‘plsRglm’, ‘pvclust’, ‘rdiversity’, ‘smerc’, ‘TESS’ Warning: package ‘phaseR’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependency ‘som’ begin installing package ‘som’ begin installing package ‘fastkmedoids’ begin installing package ‘plsdof’ begin installing package ‘rdiversity’ begin installing package ‘bnstruct’ begin installing package ‘smerc’ begin installing package ‘plsdepot’ begin installing package ‘mvMORPH’ begin installing package ‘GUniFrac’ begin installing package ‘pvclust’ begin installing package ‘TESS’ begin installing package ‘MPSEM’ begin installing package ‘graphsim’ begin installing package ‘multiplex’ begin installing package ‘multinet’ begin installing package ‘bipartite’ * installing *source* package ‘pvclust’ ... ** this is package ‘pvclust’ version ‘2.2-0’ ** package ‘pvclust’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pvclust) * installing *source* package ‘plsdof’ ... ** this is package ‘plsdof’ version ‘0.3-2’ ** package ‘plsdof’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsdof) * installing *source* package ‘plsdepot’ ... ** this is package ‘plsdepot’ version ‘0.2.0’ ** package ‘plsdepot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsdepot) * installing *source* package ‘som’ ... ** this is package ‘som’ version ‘0.3-5.2’ ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpbw2iXQ/R.INSTALLf1b1f3109f932/som/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:227:20, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:217:24, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:34:17: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpbw2iXQ/R.INSTALLf1b1f3109f932/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) begin installing package ‘chemometrics’ * installing *source* package ‘MPSEM’ ... ** this is package ‘MPSEM’ version ‘0.6-1’ ** package ‘MPSEM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmphr5zqg/R.INSTALLf1b335e74dc56/MPSEM/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MPSEM.c -o MPSEM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MPSEM.so MPSEM.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmphr5zqg/R.INSTALLf1b335e74dc56/MPSEM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MPSEM/00new/MPSEM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MPSEM) * installing *source* package ‘rdiversity’ ... ** this is package ‘rdiversity’ version ‘2.2.0’ ** package ‘rdiversity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdiversity) * installing *source* package ‘graphsim’ ... ** this is package ‘graphsim’ version ‘1.0.4’ ** package ‘graphsim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graphsim) * installing *source* package ‘chemometrics’ ... ** this is package ‘chemometrics’ version ‘1.4.4’ ** package ‘chemometrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chemometrics) * installing *source* package ‘bnstruct’ ... ** this is package ‘bnstruct’ version ‘1.0.15’ ** package ‘bnstruct’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2X65sJ/R.INSTALLf1b222e57d1fb/bnstruct/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bnstruct_init.c -o bnstruct_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c impfast.c -o impfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmhcfast.c -o mmhcfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smfast.c -o smfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o util.c: In function ‘score_node_1’: util.c:52:10: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 52 | return score; | ^~~~~ util.c:35:10: note: ‘score’ was declared here 35 | double score; | ^~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bnstruct.so bnstruct_init.o impfast.o mmhcfast.o smfast.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2X65sJ/R.INSTALLf1b222e57d1fb/bnstruct/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bnstruct/00new/bnstruct/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bnstruct) * installing *source* package ‘fastkmedoids’ ... ** this is package ‘fastkmedoids’ version ‘1.2’ ** package ‘fastkmedoids’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsGYFqB/R.INSTALLf1b26dd441f6/fastkmedoids/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pam.cpp -o pam.o In file included from pam.cpp:21: pam.h: In member function ‘int Xoroshiro128Random::nextInt(int)’: pam.h:57:55: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 57 | int r = (int)((n & -n) == n ? nextLong() & n - 1 // power of two | ~~^~~ pam.h: In member function ‘std::vector Xoroshiro128Random::randomSample(int, int)’: pam.h:82:35: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 82 | while (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.h: At global scope: pam.h:465:25: warning: ‘virtual Assignment& Assignment::operator=(const Assignment&)’ was hidden [-Woverloaded-virtual=] 465 | virtual Assignment& operator=(const Assignment& other); | ^~~~~~~~ pam.h:533:7: note: by ‘FastAssignment& FastAssignment::operator=(const FastAssignment&)’ 533 | class FastAssignment : public Assignment | ^~~~~~~~~~~~~~ pam.cpp: In member function ‘double LAB::getMinDist(int, std::vector&, std::vector&)’: pam.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | for (int i=0; i LAB::run(const std::vector&, int)’: pam.cpp:166:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 191 | while(medids.size() < k) { | ~~~~~~~~~~~~~~^~~ pam.cpp:203:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | for (int j=0; j&)’: pam.cpp:374:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int j=0; j&, std::vector&, std::vector&, std::vector&)’: pam.cpp:522:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 522 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 527 | for(int i = 0; i < cost.size(); i++) { | ~~^~~~~~~~~~~~~ pam.cpp: In member function ‘virtual void FastPAM::computeReassignmentCost(int, std::vector&)’: pam.cpp:566:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 566 | for(int pi = pj + 1; pi < cost.size(); pi++) { | ~~~^~~~~~~~~~~~~ pam.cpp: In member function ‘virtual double FastPAM::assignToNearestCluster(std::vector&)’: pam.cpp:608:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 608 | for (int h=0; h< means.size(); ++h) { | ~^~~~~~~~~~~~~~ pam.cpp: In member function ‘int FastPAM::argmin(const std::vector&)’: pam.cpp:639:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 639 | for(int i = 0; i < best.size(); i++) { | ~~^~~~~~~~~~~~~ pam.cpp: In member function ‘int FastPAM::updateSecondNearest(int, std::vector&, int, double, int)’: pam.cpp:716:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 716 | for (int i=0; i PAMUtils::randomSample(Xoroshiro128Random&, int, int, const std::vector&)’: pam.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 740 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 748 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 756 | if (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.cpp:761:58: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 761 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 822 | for (int k=0; k&, std::vector&, std::vector&, std::vector&)’: pam.cpp:844:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 844 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 856 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 916 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | for(int i = 0; i < medoids.size(); i++) { | ~~^~~~~~~~~~~~~~~~ pam.cpp: In member function ‘virtual bool Assignment::hasMedoid(int)’: pam.cpp:1157:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1157 | for (int i=0; i&, int)’: pam.cpp:344:30: warning: ‘bestid’ may be used uninitialized [-Wmaybe-uninitialized] 344 | medoids[bestcluster] = bestid; pam.cpp:313:9: note: ‘bestid’ was declared here 313 | int bestid; | ^~~~~~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastkmedoids.cpp -o rcpp_fastkmedoids.o In file included from rcpp_fastkmedoids.cpp:19: pam.h: In member function ‘int Xoroshiro128Random::nextInt(int)’: pam.h:57:55: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 57 | int r = (int)((n & -n) == n ? nextLong() & n - 1 // power of two | ~~^~~ pam.h: In member function ‘std::vector Xoroshiro128Random::randomSample(int, int)’: pam.h:82:35: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 82 | while (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.h: At global scope: pam.h:465:25: warning: ‘virtual Assignment& Assignment::operator=(const Assignment&)’ was hidden [-Woverloaded-virtual=] 465 | virtual Assignment& operator=(const Assignment& other); | ^~~~~~~~ pam.h:533:7: note: by ‘FastAssignment& FastAssignment::operator=(const FastAssignment&)’ 533 | class FastAssignment : public Assignment | ^~~~~~~~~~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastkmedoids.so RcppExports.o pam.o rcpp_fastkmedoids.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsGYFqB/R.INSTALLf1b26dd441f6/fastkmedoids/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastkmedoids/00new/fastkmedoids/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastkmedoids) * installing *source* package ‘TESS’ ... ** this is package ‘TESS’ version ‘2.1.2’ ** package ‘TESS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpawgEnR/R.INSTALLf1b3170334749/TESS/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mass_extinction_equations.cpp -o mass_extinction_equations.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TESS.so RcppExports.o mass_extinction_equations.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpawgEnR/R.INSTALLf1b3170334749/TESS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TESS/00new/TESS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TESS) * installing *source* package ‘multiplex’ ... ** this is package ‘multiplex’ version ‘3.9’ ** package ‘multiplex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiplex) * installing *source* package ‘bipartite’ ... ** this is package ‘bipartite’ version ‘2.22’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDhMOla/R.INSTALLf1b3d3a2f0c27/bipartite/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bmn5.cc -o bmn5.o bmn5.cc: In function ‘void matrixSize(std::string, int&, int&, int&)’: bmn5.cc:511:16: warning: argument 1 null where non-null expected [-Wnonnull] 511 | b=fgetc(f); | ~~~~~^~~ In file included from /usr/include/c++/14/cstdio:42, from /home/hornik/tmp/R/include/R.h:40, from bmn5.cc:1: /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:514:24: warning: argument 1 null where non-null expected [-Wnonnull] 514 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:522:24: warning: argument 1 null where non-null expected [-Wnonnull] 522 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:530:24: warning: argument 1 null where non-null expected [-Wnonnull] 530 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:537:23: warning: argument 1 null where non-null expected [-Wnonnull] 537 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:542:24: warning: argument 1 null where non-null expected [-Wnonnull] 542 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:552:32: warning: argument 1 null where non-null expected [-Wnonnull] 552 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:555:39: warning: argument 1 null where non-null expected [-Wnonnull] 555 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:560:24: warning: argument 1 null where non-null expected [-Wnonnull] 560 | b=fgetc(f); /*leo el primer char de la segunda fila*/ | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:564:31: warning: argument 1 null where non-null expected [-Wnonnull] 564 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:571:32: warning: argument 1 null where non-null expected [-Wnonnull] 571 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc: In function ‘void readMatrix(std::string, int, int, int, int**)’: bmn5.cc:595:16: warning: argument 1 null where non-null expected [-Wnonnull] 595 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:598:24: warning: argument 1 null where non-null expected [-Wnonnull] 598 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:604:24: warning: argument 1 null where non-null expected [-Wnonnull] 604 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:612:32: warning: argument 1 null where non-null expected [-Wnonnull] 612 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:619:32: warning: argument 1 null where non-null expected [-Wnonnull] 619 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ In file included from /usr/include/stdio.h:970: In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:954: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ bmn5.cc:1232:23: warning: argument 1 null where non-null expected [-Wnonnull] 1232 | fclose(out); | ~~~~~~^~~~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ bmn5.cc:1346:23: warning: argument 1 null where non-null expected [-Wnonnull] 1346 | if (bmo==1) fclose(out); | ~~~~~~^~~~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c identifyModules.cc -o identifyModules.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bipartite.so bmn5.o identifyModules.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDhMOla/R.INSTALLf1b3d3a2f0c27/bipartite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bipartite/00new/bipartite/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bipartite) begin installing package ‘plsRglm’ * installing *source* package ‘mvMORPH’ ... ** this is package ‘mvMORPH’ version ‘1.2.1’ ** package ‘mvMORPH’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpED5cHO/R.INSTALLf1b2f11af33c/mvMORPH/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_row.c -o chol_rpf_row.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_univ.c -o chol_rpf_univ.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar-matrix-simmap.c -o covar-matrix-simmap.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c givens.c -o givens.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kronecker.c -o kronecker.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvMORPH_init.c -o mvMORPH_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-mat.c -o mvmorph-covar-mat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou-sparse.c -o mvmorph-covar-ou-sparse.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou.c -o mvmorph-covar-ou.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph_ou_mat_rpf.c -o mvmorph_ou_mat_rpf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pic_loglik_mvmorph.c -o pic_loglik_mvmorph.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadprod.c -o quadprod.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c root2tip.c -o root2tip.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spherical.c -o spherical.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqrtMat.c -o sqrtMat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c time_serie_expectation.c -o time_serie_expectation.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weight-matrix-mvmorph.c -o weight-matrix-mvmorph.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvMORPH.so chol_rpf_row.o chol_rpf_univ.o covar-matrix-simmap.o givens.o kronecker.o mvMORPH_init.o mvmorph-covar-mat.o mvmorph-covar-ou-sparse.o mvmorph-covar-ou.o mvmorph_ou_mat_rpf.o pic_loglik_mvmorph.o quadprod.o root2tip.o spherical.o sqrtMat.o time_serie_expectation.o utils.o weight-matrix-mvmorph.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpED5cHO/R.INSTALLf1b2f11af33c/mvMORPH/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvMORPH/00new/mvMORPH/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvMORPH) * installing *source* package ‘GUniFrac’ ... ** this is package ‘GUniFrac’ version ‘1.8’ ** package ‘GUniFrac’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnrfiY3/R.INSTALLf1b391d16b4ce/GUniFrac/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PairwiseD.cpp -o PairwiseD.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gmpr.cpp -o gmpr.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GUniFrac.so PairwiseD.o RcppExports.o gmpr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnrfiY3/R.INSTALLf1b391d16b4ce/GUniFrac/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GUniFrac/00new/GUniFrac/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GUniFrac) * installing *source* package ‘smerc’ ... ** this is package ‘smerc’ version ‘1.8.4’ ** package ‘smerc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTPMxLR/R.INSTALLf1b1e4bdaeaff/smerc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_functions.cpp -o distance_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c noc_cpp.cpp -o noc_cpp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optimized_statistics.cpp -o optimized_statistics.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scsg2_cpp.cpp -o scsg2_cpp.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o smerc.so RcppExports.o distance_functions.o noc_cpp.o optimized_statistics.o scsg2_cpp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTPMxLR/R.INSTALLf1b1e4bdaeaff/smerc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smerc/00new/smerc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smerc) * installing *source* package ‘plsRglm’ ... ** this is package ‘plsRglm’ version ‘1.5.1’ ** package ‘plsRglm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsRglm) * installing *source* package ‘multinet’ ... ** this is package ‘multinet’ version ‘4.2.2’ ** package ‘multinet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBRPk0z/R.INSTALLf1b3816e42694/multinet/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c r_functions.cpp -o r_functions.o r_functions.cpp: In function ‘RMLNetwork growMultiplex(size_t, long int, const Rcpp::GenericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericMatrix&)’: r_functions.cpp:150:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:150:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:151:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:151:77: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:158:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 158 | for (size_t i=0; i >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1846 | if (vertices.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:1914:26: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1914 | if (edges.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp: In function ‘Rcpp::DataFrame abacus_ml(const RMLNetwork&, int, int)’: r_functions.cpp:3171:10: warning: unused variable ‘mnet’ [-Wunused-variable] 3171 | auto mnet = rmnet.get_mlnet(); | ^~~~ r_functions.cpp: In function ‘Rcpp::List to_list(const Rcpp::DataFrame&, const RMLNetwork&)’: r_functions.cpp:3305:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3305 | for (size_t i=0; isize()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3392:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3392 | else if (w_inter.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3413:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3413 | else if (gravity.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from src/community/mlcpm.hpp:22, from r_functions.cpp:11: src/community/mlcpm.ipp: In instantiation of ‘std::unique_ptr > uu::net::mlcpm(const M*, size_t, size_t) [with M = MultilayerNetwork; size_t = long unsigned int]’: r_functions.cpp:3119:28: required from here 3119 | auto com_struct = mlcpm(mnet, k, m); | ~~~~~^~~~~~~~~~~~ src/community/mlcpm.ipp:63:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 63 | result->add(std::move(c->to_community())); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/mlcpm.ipp:63:20: note: remove ‘std::move’ call In file included from src/community/modularity.hpp:47, from r_functions.cpp:12: src/community/modularity.ipp: In instantiation of ‘double uu::net::modularity(const M*, const COMM*, double) [with M = MultilayerNetwork; COMM = CommunityStructure]’: r_functions.cpp:3248:31: required from here 3248 | return uu::net::modularity(mnet, communities.get(), omega); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/modularity.ipp:149:15: warning: unused variable ‘actor’ [-Wunused-variable] 149 | for (auto actor: *mnet->actors()) | ^~~~~ r_functions.cpp: In function ‘Rcpp::DataFrame getValues(const RMLNetwork&, const std::string&, const Rcpp::DataFrame&, const Rcpp::DataFrame&, const Rcpp::DataFrame&)’: r_functions.cpp:1732:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1732 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1613:36: note: ‘att’ was declared here 1613 | const uu::core::Attribute* att; | ^~~ r_functions.cpp:1599:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1599 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1517:36: note: ‘att’ was declared here 1517 | const uu::core::Attribute* att; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_module_definition.cpp -o rcpp_module_definition.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_utils.cpp -o rcpp_utils.o rcpp_utils.cpp: In function ‘std::vector > resolve_const_vertices(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:237:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 237 | for (int i=0; i > resolve_vertices(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:278:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 278 | for (int i=0; i > resolve_const_edges(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:322:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 322 | for (int i=0; i > resolve_edges(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for (int i=0; i > to_communities(const Rcpp::DataFrame&, const uu::net::MultilayerNetwork*)’: rcpp_utils.cpp:541:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 541 | for (size_t i=0; i::__cast(const std::chrono::duration<_Rep, _Period>&) [with _Rep = long double; _Period = std::ratio<1>; _ToDur = std::chrono::duration; _CF = std::ratio<1>; _CR = long double]’, inlined from ‘constexpr std::chrono::__enable_if_is_duration<_ToDur> std::chrono::duration_cast(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:289:23, inlined from ‘constexpr std::chrono::__enable_if_is_duration<_ToDur> std::chrono::floor(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:390:43, inlined from ‘constexpr std::enable_if_t<((bool)std::__and_, std::__not_ > >::value), _ToDur> std::chrono::round(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:435:37, inlined from ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’ at src/core/attributes/date.hpp:8216:36: /usr/include/c++/14/bits/chrono.h:201:27: warning: ‘S’ may be used uninitialized [-Wmaybe-uninitialized] 201 | return _ToDur(static_cast<__to_rep>(__d.count())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/attributes/Time.hpp:18: src/core/attributes/date.hpp: In function ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’: src/core/attributes/date.hpp:8214:37: note: ‘S’ was declared here 8214 | long double S; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/AttributeType.cpp -o src/core/attributes/AttributeType.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/Time.cpp -o src/core/attributes/Time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/observers/ObserverStore.cpp -o src/core/observers/ObserverStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/communities.cpp -o src/generation/communities.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/erdos_renyi.cpp -o src/generation/erdos_renyi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/standard_graphs.cpp -o src/generation/standard_graphs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass2/parser.cpp -o src/io/_impl/parser/mlpass2/parser.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass2/actions.hpp:5, from src/io/_impl/parser/mlpass2/parser.hpp:4, from src/io/_impl/parser/mlpass2/parser.cpp:1: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass2/parser.hpp:5: src/io/_impl/parser/mlpass2/grammar.hpp:268:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 268 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:274:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 274 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:276:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 276 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass1/utility_functions.cpp -o src/io/_impl/parser/mlpass1/utility_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass1/parser.cpp -o src/io/_impl/parser/mlpass1/parser.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass1/actions.hpp:5, from src/io/_impl/parser/mlpass1/parser.hpp:4, from src/io/_impl/parser/mlpass1/parser.cpp:1: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass1/parser.hpp:5: src/io/_impl/parser/mlpass1/grammar.hpp:267:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 267 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:273:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 273 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:275:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 275 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/read_common.cpp -o src/io/_impl/read_common.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/GraphIOFileSection.cpp -o src/io/_impl/GraphIOFileSection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_network.cpp -o src/io/read_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/write_multilayer_network.cpp -o src/io/write_multilayer_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_probabilistic_network.cpp -o src/io/read_probabilistic_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_weighted_network.cpp -o src/io/read_weighted_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_multilayer_network.cpp -o src/io/read_multilayer_network.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass1/actions.hpp:5, from src/io/_impl/parser/mlpass1/parser.hpp:4, from src/io/read_multilayer_network.cpp:6: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass1/parser.hpp:5: src/io/_impl/parser/mlpass1/grammar.hpp:267:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 267 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:273:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 273 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:275:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 275 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ In file included from src/io/_impl/parser/mlpass2/parser.hpp:5, from src/io/read_multilayer_network.cpp:7: src/io/_impl/parser/mlpass2/grammar.hpp:268:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 268 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:274:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 274 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:276:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 276 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_temporal_network.cpp -o src/io/read_temporal_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/layout/multiforce.cpp -o src/layout/multiforce.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultilayerNetwork.cpp -o src/networks/MultilayerNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/Network.cpp -o src/networks/Network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/LayerStore.cpp -o src/networks/_impl/stores/LayerStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MLECubeStore.cpp -o src/networks/_impl/stores/MLECubeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/VertexStore.cpp -o src/networks/_impl/stores/VertexStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/SimpleEdgeStore.cpp -o src/networks/_impl/stores/SimpleEdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MultiEdgeStore.cpp -o src/networks/_impl/stores/MultiEdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/EdgeStore.cpp -o src/networks/_impl/stores/EdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/CheckVerticesExistObserver.cpp -o src/networks/_impl/observers/CheckVerticesExistObserver.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/NoLoopCheckObserver2.cpp -o src/networks/_impl/observers/NoLoopCheckObserver2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/OrderedMultiplexNetwork.cpp -o src/networks/OrderedMultiplexNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultiNetwork.cpp -o src/networks/MultiNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/weight.cpp -o src/networks/weight.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/probability.cpp -o src/networks/probability.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/time.cpp -o src/networks/time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Dyad.cpp -o src/objects/Dyad.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Walk.cpp -o src/objects/Walk.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Triad.cpp -o src/objects/Triad.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Path.cpp -o src/objects/Path.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/MLVertex.cpp -o src/objects/MLVertex.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Trail.cpp -o src/objects/Trail.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Vertex.cpp -o src/objects/Vertex.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Edge.cpp -o src/objects/Edge.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/MECube.cpp -o src/olap/MECube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/indexing.cpp -o src/olap/indexing.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/VCube.cpp -o src/olap/VCube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Indexes.cpp -o src/olap/sel/Indexes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Range.cpp -o src/olap/sel/Range.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Set.cpp -o src/olap/sel/Set.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/All.cpp -o src/olap/sel/All.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/IndexIterator.cpp -o src/olap/sel/IndexIterator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/ECube.cpp -o src/olap/ECube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/time.cpp -o src/olap/time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/slice.cpp -o src/operations/slice.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/sample.cpp -o src/operations/sample.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/utils/summary.cpp -o src/utils/summary.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Network.cpp -o infomap/infomap/Network.o infomap/infomap/Network.cpp: In member function ‘void infomap::Network::printParsingResult(bool)’: infomap/infomap/Network.cpp:1259:18: warning: unused variable ‘numNodesIgnored’ [-Wunused-variable] 1259 | unsigned int numNodesIgnored = m_numNodesFound - m_numNodes; | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/FlowNetwork.cpp -o infomap/infomap/FlowNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Node.cpp -o infomap/infomap/Node.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/TreeData.cpp -o infomap/infomap/TreeData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapContext.cpp -o infomap/infomap/InfomapContext.o In file included from infomap/infomap/InfomapGreedyTypeSpecialized.h:31, from infomap/infomap/InfomapContext.cpp:30: infomap/infomap/InfomapGreedyCommon.h:1022: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1022 | #pragma omp parallel for schedule(dynamic) // Use dynamic scheduling as some threads could end early infomap/infomap/InfomapGreedyCommon.h:1184: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1184 | #pragma omp critical (moveUpdate) g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/NetworkAdapter.cpp -o infomap/infomap/NetworkAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MultiplexNetwork.cpp -o infomap/infomap/MultiplexNetwork.o infomap/infomap/MultiplexNetwork.cpp: In member function ‘std::map::const_iterator* infomap::MultiplexNetwork::getUndirLinkItPtr(std::vector >, std::_Rb_tree_const_iterator > > >&)’: infomap/infomap/MultiplexNetwork.cpp:1090:12: warning: ‘linkIt’ may be used uninitialized [-Wmaybe-uninitialized] 1090 | return linkIt; | ^~~~~~ infomap/infomap/MultiplexNetwork.cpp:1068:35: note: ‘linkIt’ was declared here 1068 | IntraLinkMap::const_iterator *linkIt; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemoryNetworkAdapter.cpp -o infomap/infomap/MemoryNetworkAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemNetwork.cpp -o infomap/infomap/MemNetwork.o infomap/infomap/MemNetwork.cpp: In member function ‘void infomap::MemNetwork::simulateMemoryToIncompleteData()’: infomap/infomap/MemNetwork.cpp:525:18: warning: unused variable ‘numStateLinksBefore’ [-Wunused-variable] 525 | unsigned int numStateLinksBefore = m_numStateLinks; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/MemNetwork.cpp:528:18: warning: unused variable ‘numAggregatedLinksBefore’ [-Wunused-variable] 528 | unsigned int numAggregatedLinksBefore = m_numAggregatedStateLinks; | ^~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemFlowNetwork.cpp -o infomap/infomap/MemFlowNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapBase.cpp -o infomap/infomap/InfomapBase.o infomap/infomap/InfomapBase.cpp:1109:8: warning: multi-line comment [-Wcomment] 1109 | //Log(0,1) << hideIf(!acceptSolution) << ((hierarchicalCodelength - workingHierarchicalCodelength) \ | ^ infomap/infomap/InfomapBase.cpp:1949: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1949 | #pragma omp parallel for schedule(dynamic) infomap/infomap/InfomapBase.cpp: In member function ‘void infomap::InfomapBase::run(infomap::HierarchicalNetwork&)’: infomap/infomap/InfomapBase.cpp:329:28: warning: unused variable ‘s’ [-Wunused-variable] 329 | PerIterationStats& s = m_iterationStats[i]; | ^ infomap/infomap/InfomapBase.cpp:372:22: warning: unused variable ‘numFields’ [-Wunused-variable] 372 | unsigned int numFields = 5 + ((2 + (m_config.isMemoryNetwork() ? 1 : 0)) * (m_config.twoLevel ? 1 : 2)); | ^~~~~~~~~ infomap/infomap/InfomapBase.cpp:376:16: warning: unused variable ‘secondsMin’ [-Wunused-variable] 376 | double secondsMin = m_iterationStats[0].seconds; | ^~~~~~~~~~ infomap/infomap/InfomapBase.cpp:377:16: warning: unused variable ‘secondsMax’ [-Wunused-variable] 377 | double secondsMax = m_iterationStats[iLast].seconds; | ^~~~~~~~~~ infomap/infomap/InfomapBase.cpp:378:16: warning: unused variable ‘secondsMedian’ [-Wunused-variable] 378 | double secondsMedian = m_iterationStats[numTrials / 2].seconds; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:379:16: warning: unused variable ‘secondsAverage’ [-Wunused-variable] 379 | double secondsAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:383:22: warning: unused variable ‘numTopModulesMin’ [-Wunused-variable] 383 | unsigned int numTopModulesMin = m_iterationStats[0].numTopModules; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:384:22: warning: unused variable ‘numTopModulesMax’ [-Wunused-variable] 384 | unsigned int numTopModulesMax = m_iterationStats[iLast].numTopModules; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:385:22: warning: unused variable ‘numTopModulesMedian’ [-Wunused-variable] 385 | unsigned int numTopModulesMedian = m_iterationStats[numTrials / 2].numTopModules; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:386:16: warning: unused variable ‘numTopModulesAverage’ [-Wunused-variable] 386 | double numTopModulesAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:390:16: warning: unused variable ‘topPerplexityMin’ [-Wunused-variable] 390 | double topPerplexityMin = m_iterationStats[0].topPerplexity; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:391:16: warning: unused variable ‘topPerplexityMax’ [-Wunused-variable] 391 | double topPerplexityMax = m_iterationStats[iLast].topPerplexity; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:392:16: warning: unused variable ‘topPerplexityMedian’ [-Wunused-variable] 392 | double topPerplexityMedian = m_iterationStats[numTrials / 2].topPerplexity; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:393:16: warning: unused variable ‘topPerplexityAverage’ [-Wunused-variable] 393 | double topPerplexityAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:397:16: warning: unused variable ‘topOverlapMin’ [-Wunused-variable] 397 | double topOverlapMin = m_iterationStats[0].topOverlap; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:398:16: warning: unused variable ‘topOverlapMax’ [-Wunused-variable] 398 | double topOverlapMax = m_iterationStats[iLast].topOverlap; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:399:16: warning: unused variable ‘topOverlapMedian’ [-Wunused-variable] 399 | double topOverlapMedian = m_iterationStats[numTrials / 2].topOverlap; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:400:16: warning: unused variable ‘topOverlapAverage’ [-Wunused-variable] 400 | double topOverlapAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:404:22: warning: unused variable ‘numBottomModulesMin’ [-Wunused-variable] 404 | unsigned int numBottomModulesMin = m_iterationStats[0].numBottomModules; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:405:22: warning: unused variable ‘numBottomModulesMax’ [-Wunused-variable] 405 | unsigned int numBottomModulesMax = m_iterationStats[iLast].numBottomModules; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:406:22: warning: unused variable ‘numBottomModulesMedian’ [-Wunused-variable] 406 | unsigned int numBottomModulesMedian = m_iterationStats[numTrials / 2].numBottomModules; | ^~~~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:407:16: warning: unused variable ‘numBottomModulesAverage’ [-Wunused-variable] 407 | double numBottomModulesAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:411:16: warning: unused variable ‘bottomPerplexityMin’ [-Wunused-variable] 411 | double bottomPerplexityMin = m_iterationStats[0].bottomPerplexity; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:412:16: warning: unused variable ‘bottomPerplexityMax’ [-Wunused-variable] 412 | double bottomPerplexityMax = m_iterationStats[iLast].bottomPerplexity; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:413:16: warning: unused variable ‘bottomPerplexityMedian’ [-Wunused-variable] 413 | double bottomPerplexityMedian = m_iterationStats[numTrials / 2].bottomPerplexity; | ^~~~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:414:16: warning: unused variable ‘bottomPerplexityAverage’ [-Wunused-variable] 414 | double bottomPerplexityAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:418:16: warning: unused variable ‘bottomOverlapMin’ [-Wunused-variable] 418 | double bottomOverlapMin = m_iterationStats[0].bottomOverlap; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:419:16: warning: unused variable ‘bottomOverlapMax’ [-Wunused-variable] 419 | double bottomOverlapMax = m_iterationStats[iLast].bottomOverlap; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:420:16: warning: unused variable ‘bottomOverlapMedian’ [-Wunused-variable] 420 | double bottomOverlapMedian = m_iterationStats[numTrials / 2].bottomOverlap; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:421:16: warning: unused variable ‘bottomOverlapAverage’ [-Wunused-variable] 421 | double bottomOverlapAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:425:22: warning: unused variable ‘maxDepthMin’ [-Wunused-variable] 425 | unsigned int maxDepthMin = m_iterationStats[0].maxDepth; | ^~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:426:22: warning: unused variable ‘maxDepthMax’ [-Wunused-variable] 426 | unsigned int maxDepthMax = m_iterationStats[iLast].maxDepth; | ^~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:427:22: warning: unused variable ‘maxDepthMedian’ [-Wunused-variable] 427 | unsigned int maxDepthMedian = m_iterationStats[numTrials / 2].maxDepth; | ^~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:428:16: warning: unused variable ‘maxDepthAverage’ [-Wunused-variable] 428 | double maxDepthAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:432:16: warning: unused variable ‘weightedDepthMin’ [-Wunused-variable] 432 | double weightedDepthMin = m_iterationStats[0].weightedDepth; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:433:16: warning: unused variable ‘weightedDepthMax’ [-Wunused-variable] 433 | double weightedDepthMax = m_iterationStats[iLast].weightedDepth; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:434:16: warning: unused variable ‘weightedDepthMedian’ [-Wunused-variable] 434 | double weightedDepthMedian = m_iterationStats[numTrials / 2].weightedDepth; | ^~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:435:16: warning: unused variable ‘weightedDepthAverage’ [-Wunused-variable] 435 | double weightedDepthAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:439:16: warning: unused variable ‘codelengthMin’ [-Wunused-variable] 439 | double codelengthMin = m_iterationStats[0].codelength; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:440:16: warning: unused variable ‘codelengthMax’ [-Wunused-variable] 440 | double codelengthMax = m_iterationStats[iLast].codelength; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:441:16: warning: unused variable ‘codelengthMedian’ [-Wunused-variable] 441 | double codelengthMedian = m_iterationStats[numTrials / 2].codelength; | ^~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:442:16: warning: unused variable ‘codelengthAverage’ [-Wunused-variable] 442 | double codelengthAverage = std::accumulate(m_iterationStats.begin(), | ^~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:128:18: warning: variable ‘bestNumLevels’ set but not used [-Wunused-but-set-variable] 128 | unsigned int bestNumLevels = 0; | ^~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:270:18: warning: unused variable ‘fieldWidth’ [-Wunused-variable] 270 | unsigned int fieldWidth = 16; | ^~~~~~~~~~ infomap/infomap/InfomapBase.cpp: In member function ‘unsigned int infomap::InfomapBase::findSuperModulesIterativelyFast(infomap::PartitionQueue&)’: infomap/infomap/InfomapBase.cpp:1096:22: warning: unused variable ‘numOptimizationLoops’ [-Wunused-variable] 1096 | unsigned int numOptimizationLoops = optimizeModules(); | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:1066:18: warning: unused variable ‘networkLevel’ [-Wunused-variable] 1066 | unsigned int networkLevel = 0; | ^~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp: In member function ‘void infomap::InfomapBase::partition(unsigned int, bool, bool)’: infomap/infomap/InfomapBase.cpp:1468:12: warning: variable ‘compression’ set but not used [-Wunused-but-set-variable] 1468 | double compression = (oldCodelength - codelength)/oldCodelength; | ^~~~~~~~~~~ infomap/infomap/InfomapBase.cpp: In member function ‘void infomap::InfomapBase::mergeAndConsolidateRepeatedly(bool, bool)’: infomap/infomap/InfomapBase.cpp:1597:22: warning: unused variable ‘numFastLoops’ [-Wunused-variable] 1597 | unsigned int numFastLoops = optimizeModulesCrude(); | ^~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp:1623:18: warning: variable ‘numOptimizationLoops’ set but not used [-Wunused-but-set-variable] 1623 | unsigned int numOptimizationLoops = optimizeModules(); | ^~~~~~~~~~~~~~~~~~~~ infomap/infomap/InfomapBase.cpp: In member function ‘void infomap::InfomapBase::printNetworkData(infomap::HierarchicalNetwork&, std::string)’: infomap/infomap/InfomapBase.cpp:2627:14: warning: unused variable ‘writeEdges’ [-Wunused-variable] 2627 | bool writeEdges = m_config.printBinaryFlowTree || m_config.printFlowTree || m_config.printMap || m_externalOutput; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/HierarchicalNetwork.cpp -o infomap/io/HierarchicalNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/TreeDataWriter.cpp -o infomap/io/TreeDataWriter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/BipartiteClusterReader.cpp -o infomap/io/BipartiteClusterReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/version.cpp -o infomap/io/version.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ClusterReader.cpp -o infomap/io/ClusterReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ProgramInterface.cpp -o infomap/io/ProgramInterface.o infomap/io/ProgramInterface.cpp: In member function ‘void infomap::ProgramInterface::exitWithUsage(bool)’: infomap/io/ProgramInterface.cpp:128:32: warning: unused variable ‘numSpaces’ [-Wunused-variable] 128 | std::string::size_type numSpaces = maxLength + 3 - optionStrings[i].length(); | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/FileURI.cpp -o infomap/utils/FileURI.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/Logger.cpp -o infomap/utils/Logger.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o multinet.so RcppExports.o init.o r_functions.o rcpp_module_definition.o rcpp_utils.o src/community/_impl/common.o src/community/_impl/glouvain2_utils.o src/community/_impl/MetaNetwork.o src/community/_impl/GMetaNetwork.o src/community/_impl/louvain_utils.o src/community/optimize_slices.o src/core/objects/Object.o src/core/utils/random.o src/core/utils/NameIterator.o src/core/utils/string.o src/core/utils/CSVReader.o src/core/utils/vector.o src/core/exceptions/NullPtrException.o src/core/exceptions/FileNotFoundException.o src/core/exceptions/assert_not_null.o src/core/exceptions/DuplicateElementException.o src/core/exceptions/ExternalLibException.o src/core/exceptions/ElementNotFoundException.o src/core/exceptions/OutOfBoundsException.o src/core/exceptions/OperationNotSupportedException.o src/core/exceptions/WrongParameterException.o src/core/exceptions/WrongFormatException.o src/core/attributes/Text.o src/core/attributes/Attribute.o src/core/attributes/conversion.o src/core/attributes/AttributeType.o src/core/attributes/Time.o src/core/observers/ObserverStore.o src/generation/communities.o src/generation/erdos_renyi.o src/generation/standard_graphs.o src/io/_impl/parser/mlpass2/parser.o src/io/_impl/parser/mlpass1/utility_functions.o src/io/_impl/parser/mlpass1/parser.o src/io/_impl/read_common.o src/io/_impl/GraphIOFileSection.o src/io/read_network.o src/io/write_multilayer_network.o src/io/read_probabilistic_network.o src/io/read_weighted_network.o src/io/read_multilayer_network.o src/io/read_temporal_network.o src/layout/multiforce.o src/networks/MultilayerNetwork.o src/networks/Network.o src/networks/_impl/stores/LayerStore.o src/networks/_impl/stores/MLECubeStore.o src/networks/_impl/stores/VertexStore.o src/networks/_impl/stores/SimpleEdgeStore.o src/networks/_impl/stores/MultiEdgeStore.o src/networks/_impl/stores/EdgeStore.o src/networks/_impl/observers/CheckVerticesExistObserver.o src/networks/_impl/observers/NoLoopCheckObserver2.o src/networks/OrderedMultiplexNetwork.o src/networks/MultiNetwork.o src/networks/weight.o src/networks/probability.o src/networks/time.o src/objects/Dyad.o src/objects/Walk.o src/objects/Triad.o src/objects/Path.o src/objects/MLVertex.o src/objects/Trail.o src/objects/Vertex.o src/objects/Edge.o src/olap/MECube.o src/olap/indexing.o src/olap/VCube.o src/olap/sel/Indexes.o src/olap/sel/Range.o src/olap/sel/Set.o src/olap/sel/All.o src/olap/sel/IndexIterator.o src/olap/ECube.o src/olap/time.o src/operations/slice.o src/operations/sample.o src/utils/summary.o infomap/infomap/Network.o infomap/infomap/FlowNetwork.o infomap/infomap/Node.o infomap/infomap/TreeData.o infomap/infomap/InfomapContext.o infomap/infomap/NetworkAdapter.o infomap/infomap/MultiplexNetwork.o infomap/infomap/MemoryNetworkAdapter.o infomap/infomap/MemNetwork.o infomap/infomap/MemFlowNetwork.o infomap/infomap/InfomapBase.o infomap/io/HierarchicalNetwork.o infomap/io/TreeDataWriter.o infomap/io/BipartiteClusterReader.o infomap/io/version.o infomap/io/ClusterReader.o infomap/io/ProgramInterface.o infomap/utils/FileURI.o infomap/utils/Logger.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBRPk0z/R.INSTALLf1b3816e42694/multinet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-multinet/00new/multinet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multinet) checking bipartite_2.22.tar.gz ... checking bootPLS_1.0.1.tar.gz ... checking bioregion_1.2.0.tar.gz ... checking cassandRa_0.2.0.tar.gz ... checking econetwork_0.7.0.tar.gz ... checking econullnetr_0.2.1.tar.gz ... checking NIMAA_0.2.1.tar.gz ... checking nos_2.0.0.tar.gz ... checking PhageCocktail_1.0.3.tar.gz ... checking plsRglm_1.5.1.tar.gz ... checking RPANDA_2.4.tar.gz ... checking tapnet_0.3.tar.gz ... checking bipartiteD3_0.3.2.tar.gz ... checking HiveR_0.4.0.tar.gz ... checking leiden_0.4.3.1.tar.gz ... checking plsRbeta_0.3.1.tar.gz ... checking primer_1.2.0.tar.gz ... Depends: Package: bipartite Depends: R(>= 3.5.0), sna, vegan Imports: corpcor, fields, igraph, MASS, methods, permute Timings: user system elapsed bipartite 140.135 8.937 154.102 Results: Check status summary: ERROR WARNING NOTE OK Source packages 0 0 0 1 Reverse depends 1 1 5 9 Check results summary: bipartite ... OK rdepends_bioregion ... OK rdepends_bipartiteD3 ... OK rdepends_bootPLS ... OK rdepends_cassandRa ... OK rdepends_econetwork ... OK rdepends_econullnetr ... ERROR * checking examples ... [7s/9s] ERROR * checking re-building of vignette outputs ... [6s/8s] ERROR rdepends_HiveR ... OK rdepends_leiden ... OK rdepends_NIMAA ... NOTE * checking Rd cross-references ... NOTE rdepends_nos ... OK rdepends_PhageCocktail ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_plsRbeta ... OK rdepends_plsRglm ... NOTE * checking Rd cross-references ... NOTE * checking for unstated dependencies in ‘demo’ ... NOTE rdepends_primer ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_RPANDA ... WARNING * checking whether package ‘RPANDA’ can be installed ... [52s/52s] WARNING * checking R code for possible problems ... [78s/78s] NOTE rdepends_tapnet ... NOTE * checking Rd files ... [0s/0s] NOTE Check results changes: Package: econullnetr Check: CRAN incoming feasibility Old result: NOTE Package: econullnetr Check: examples New result: ERROR Package: econullnetr Check: re-building of vignette outputs New result: ERROR Package: leiden Check: CRAN incoming feasibility Old result: NOTE Package: plsRglm Check: CRAN incoming feasibility Old result: NOTE Package: primer Check: CRAN incoming feasibility Old result: NOTE Package: RPANDA Check: R code for possible problems New result: NOTE Package: RPANDA Check: whether package can be installed New result: WARNING