Package: econullnetr
Check: examples
New result: ERROR
  Running examples in ‘econullnetr-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: plot_bipartite
  > ### Title: Plot a bipartite network, colour coding individual links
  > ###   according to whether they are stronger or weaker than expected under
  > ###   the null model
  > ### Aliases: plot_bipartite
  > 
  > ### ** Examples
  > 
  > 
  > # Run the null model
  > set.seed(1234)
  > sil.null <- generate_null_net(Silene[, 2:7], Silene.plants[, 2:6], sims = 10,
  +                               c.samples = Silene[, 1],
  +                               r.samples = Silene.plants[, 1])
  [1] 1
  [1] 2
  [1] 3
  [1] 4
  [1] 5
  [1] 6
  [1] 7
  [1] 8
  [1] 9
  [1] 10
  > 
  > # Basic plot
  > plot_bipartite(sil.null)
  Error in bipartite::plotweb(obs.web, method = "normal", empty = FALSE,  : 
    unused arguments (method = "normal", col.interaction = select.vector)
  Calls: plot_bipartite
  Execution halted

Package: econullnetr
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘econullnetr-intro.Rmd’ using rmarkdown
  
  Quitting from econullnetr-intro.Rmd:105-115 [unnamed-chunk-6]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `bipartite::plotweb()`:
  ! unused arguments (method = "normal", col.interaction = select.vector, low.abun = c(8.45454545454546, 12, 38, 43.0909090909091, 3.27272727272727), abuns.type = "independent", low.abun.col = "black", high.abun.col = "black", high.lablength = 5, low.lablength = 5)
  ---
  Backtrace:
      ▆
   1. └─econullnetr::plot_bipartite(...)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'econullnetr-intro.Rmd' failed with diagnostics:
  unused arguments (method = "normal", col.interaction = select.vector, low.abun = c(8.45454545454546, 12, 38, 43.0909090909091, 3.27272727272727), abuns.type = "independent", low.abun.col = "black", high.abun.col = "black", high.lablength = 5, low.lablength = 5)
  --- failed re-building ‘econullnetr-intro.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘econullnetr-intro.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: RPANDA
Check: R code for possible problems
New result: NOTE
  plot_network: possible error in plotweb(as.matrix(link), col.low =
    col.P, col.high = col.H, col.interaction = "lightgray", empty =
    TRUE): unused arguments (col.low = col.P, col.high = col.H,
    col.interaction = "lightgray")

Package: RPANDA
Check: whether package can be installed
New result: WARNING
  Found the following significant warnings:
    Note: possible error in 'plotweb(as.matrix(link), ': unused arguments (col.low = col.P, col.high = col.H, col.interaction = "lightgray") 
  See ‘/home/hornik/tmp/CRAN_recheck/RPANDA.Rcheck/00install.out’ for details.
  Information on the location(s) of code generating the ‘Note’s can be
  obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
  to ‘yes’.
  Used C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’