downloading reverse dependencies ... downloading bioregion_1.2.0.tar.gz ... ok downloading bootPLS_1.0.1.tar.gz ... ok downloading cassandRa_0.2.0.tar.gz ... ok downloading econetwork_0.7.0.tar.gz ... ok downloading econullnetr_0.2.1.tar.gz ... ok downloading NIMAA_0.2.1.tar.gz ... ok downloading nos_2.0.0.tar.gz ... ok downloading PhageCocktail_1.0.3.tar.gz ... ok downloading plsRglm_1.5.1.tar.gz ... ok downloading RPANDA_2.4.tar.gz ... ok downloading tapnet_0.3.tar.gz ... ok downloading bipartiteD3_0.3.2.tar.gz ... ok downloading HiveR_0.4.0.tar.gz ... ok downloading leiden_0.4.3.1.tar.gz ... ok downloading plsRbeta_0.3.0.tar.gz ... ok downloading primer_1.2.0.tar.gz ... ok installing dependencies ‘bipartite’, ‘bnstruct’, ‘chemometrics’, ‘fastkmedoids’, ‘graphsim’, ‘GUniFrac’, ‘MPSEM’, ‘multinet’, ‘multiplex’, ‘mvMORPH’, ‘ParallelLogger’, ‘phaseR’, ‘plsdepot’, ‘plsdof’, ‘plsRglm’, ‘rdiversity’, ‘smerc’, ‘TESS’ also installing the dependency ‘som’ begin installing package ‘fastkmedoids’ begin installing package ‘som’ begin installing package ‘plsdof’ begin installing package ‘rdiversity’ begin installing package ‘smerc’ begin installing package ‘bnstruct’ begin installing package ‘plsdepot’ begin installing package ‘mvMORPH’ begin installing package ‘GUniFrac’ begin installing package ‘ParallelLogger’ begin installing package ‘TESS’ begin installing package ‘MPSEM’ begin installing package ‘graphsim’ begin installing package ‘multiplex’ begin installing package ‘multinet’ begin installing package ‘phaseR’ begin installing package ‘bipartite’ * installing *source* package ‘ParallelLogger’ ... ** this is package ‘ParallelLogger’ version ‘3.3.1’ ** package ‘ParallelLogger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ParallelLogger) * installing *source* package ‘plsdof’ ... ** this is package ‘plsdof’ version ‘0.3-2’ ** package ‘plsdof’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsdof) * installing *source* package ‘plsdepot’ ... ** this is package ‘plsdepot’ version ‘0.2.0’ ** package ‘plsdepot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsdepot) * installing *source* package ‘som’ ... ** this is package ‘som’ version ‘0.3-5.2’ ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMXelJj/R.INSTALL2c487576e945fc/som/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:227:20, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:217:24, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:34:17: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMXelJj/R.INSTALL2c487576e945fc/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) begin installing package ‘chemometrics’ * installing *source* package ‘phaseR’ ... ** this is package ‘phaseR’ version ‘2.2.1’ ** package ‘phaseR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phaseR) * installing *source* package ‘MPSEM’ ... ** this is package ‘MPSEM’ version ‘0.5-1’ ** package ‘MPSEM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXR4Ztg/R.INSTALL2c488f2aa2aeb4/MPSEM/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MPSEM.c -o MPSEM.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MPSEM.so MPSEM.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXR4Ztg/R.INSTALL2c488f2aa2aeb4/MPSEM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MPSEM/00new/MPSEM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MPSEM) * installing *source* package ‘rdiversity’ ... ** this is package ‘rdiversity’ version ‘2.2.0’ ** package ‘rdiversity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdiversity) * installing *source* package ‘graphsim’ ... ** this is package ‘graphsim’ version ‘1.0.3’ ** package ‘graphsim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graphsim) * installing *source* package ‘chemometrics’ ... ** this is package ‘chemometrics’ version ‘1.4.4’ ** package ‘chemometrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chemometrics) * installing *source* package ‘fastkmedoids’ ... ** this is package ‘fastkmedoids’ version ‘1.2’ ** package ‘fastkmedoids’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRQvLKP/R.INSTALL2c488329f337e1/fastkmedoids/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pam.cpp -o pam.o In file included from pam.cpp:21: pam.h: In member function ‘int Xoroshiro128Random::nextInt(int)’: pam.h:57:55: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 57 | int r = (int)((n & -n) == n ? nextLong() & n - 1 // power of two | ~~^~~ pam.h: In member function ‘std::vector Xoroshiro128Random::randomSample(int, int)’: pam.h:82:35: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 82 | while (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.h: At global scope: pam.h:465:25: warning: ‘virtual Assignment& Assignment::operator=(const Assignment&)’ was hidden [-Woverloaded-virtual=] 465 | virtual Assignment& operator=(const Assignment& other); | ^~~~~~~~ pam.h:533:7: note: by ‘FastAssignment& FastAssignment::operator=(const FastAssignment&)’ 533 | class FastAssignment : public Assignment | ^~~~~~~~~~~~~~ pam.cpp: In member function ‘double LAB::getMinDist(int, std::vector&, std::vector&)’: pam.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | for (int i=0; i LAB::run(const std::vector&, int)’: pam.cpp:166:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 191 | while(medids.size() < k) { | ~~~~~~~~~~~~~~^~~ pam.cpp:203:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | for (int j=0; j&)’: pam.cpp:374:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int j=0; j&, std::vector&, std::vector&, std::vector&)’: pam.cpp:522:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 522 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 527 | for(int i = 0; i < cost.size(); i++) { | ~~^~~~~~~~~~~~~ pam.cpp: In member function ‘virtual void FastPAM::computeReassignmentCost(int, std::vector&)’: pam.cpp:566:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 566 | for(int pi = pj + 1; pi < cost.size(); pi++) { | ~~~^~~~~~~~~~~~~ pam.cpp: In member function ‘virtual double FastPAM::assignToNearestCluster(std::vector&)’: pam.cpp:608:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 608 | for (int h=0; h< means.size(); ++h) { | ~^~~~~~~~~~~~~~ pam.cpp: In member function ‘int FastPAM::argmin(const std::vector&)’: pam.cpp:639:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 639 | for(int i = 0; i < best.size(); i++) { | ~~^~~~~~~~~~~~~ pam.cpp: In member function ‘int FastPAM::updateSecondNearest(int, std::vector&, int, double, int)’: pam.cpp:716:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 716 | for (int i=0; i PAMUtils::randomSample(Xoroshiro128Random&, int, int, const std::vector&)’: pam.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 740 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 748 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 756 | if (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.cpp:761:58: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 761 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 822 | for (int k=0; k&, std::vector&, std::vector&, std::vector&)’: pam.cpp:844:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 844 | for (int j=0; j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 856 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 916 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | for(int i = 0; i < medoids.size(); i++) { | ~~^~~~~~~~~~~~~~~~ pam.cpp: In member function ‘virtual bool Assignment::hasMedoid(int)’: pam.cpp:1157:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1157 | for (int i=0; i&, int)’: pam.cpp:344:30: warning: ‘bestid’ may be used uninitialized [-Wmaybe-uninitialized] 344 | medoids[bestcluster] = bestid; pam.cpp:313:9: note: ‘bestid’ was declared here 313 | int bestid; | ^~~~~~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_fastkmedoids.cpp -o rcpp_fastkmedoids.o In file included from rcpp_fastkmedoids.cpp:19: pam.h: In member function ‘int Xoroshiro128Random::nextInt(int)’: pam.h:57:55: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 57 | int r = (int)((n & -n) == n ? nextLong() & n - 1 // power of two | ~~^~~ pam.h: In member function ‘std::vector Xoroshiro128Random::randomSample(int, int)’: pam.h:82:35: warning: comparison of integer expressions of different signedness: ‘std::unordered_map::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 82 | while (sample_dict.size() < samplesize) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ pam.h: At global scope: pam.h:465:25: warning: ‘virtual Assignment& Assignment::operator=(const Assignment&)’ was hidden [-Woverloaded-virtual=] 465 | virtual Assignment& operator=(const Assignment& other); | ^~~~~~~~ pam.h:533:7: note: by ‘FastAssignment& FastAssignment::operator=(const FastAssignment&)’ 533 | class FastAssignment : public Assignment | ^~~~~~~~~~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastkmedoids.so RcppExports.o pam.o rcpp_fastkmedoids.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRQvLKP/R.INSTALL2c488329f337e1/fastkmedoids/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastkmedoids/00new/fastkmedoids/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastkmedoids) * installing *source* package ‘bnstruct’ ... ** this is package ‘bnstruct’ version ‘1.0.15’ ** package ‘bnstruct’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpozxVb8/R.INSTALL2c487e4ecff5ab/bnstruct/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bnstruct_init.c -o bnstruct_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c impfast.c -o impfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mmhcfast.c -o mmhcfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smfast.c -o smfast.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o util.c: In function ‘score_node_1’: util.c:52:10: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 52 | return score; | ^~~~~ util.c:35:10: note: ‘score’ was declared here 35 | double score; | ^~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bnstruct.so bnstruct_init.o impfast.o mmhcfast.o smfast.o util.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpozxVb8/R.INSTALL2c487e4ecff5ab/bnstruct/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bnstruct/00new/bnstruct/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bnstruct) * installing *source* package ‘TESS’ ... ** this is package ‘TESS’ version ‘2.1.2’ ** package ‘TESS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8imCWB/R.INSTALL2c489060e29654/TESS/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mass_extinction_equations.cpp -o mass_extinction_equations.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TESS.so RcppExports.o mass_extinction_equations.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8imCWB/R.INSTALL2c489060e29654/TESS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TESS/00new/TESS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TESS) * installing *source* package ‘multiplex’ ... ** this is package ‘multiplex’ version ‘3.9’ ** package ‘multiplex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiplex) * installing *source* package ‘GUniFrac’ ... ** this is package ‘GUniFrac’ version ‘1.8’ ** package ‘GUniFrac’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2yC7n4/R.INSTALL2c48856d5df2b8/GUniFrac/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PairwiseD.cpp -o PairwiseD.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gmpr.cpp -o gmpr.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GUniFrac.so PairwiseD.o RcppExports.o gmpr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2yC7n4/R.INSTALL2c48856d5df2b8/GUniFrac/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GUniFrac/00new/GUniFrac/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GUniFrac) * installing *source* package ‘bipartite’ ... ** this is package ‘bipartite’ version ‘2.21’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9zjXVN/R.INSTALL2c489b3d1b79b2/bipartite/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bmn5.cc -o bmn5.o bmn5.cc: In function ‘void matrixSize(std::string, int&, int&, int&)’: bmn5.cc:511:16: warning: argument 1 null where non-null expected [-Wnonnull] 511 | b=fgetc(f); | ~~~~~^~~ In file included from /usr/include/c++/14/cstdio:42, from /home/hornik/tmp/R/include/R.h:40, from bmn5.cc:1: /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:514:24: warning: argument 1 null where non-null expected [-Wnonnull] 514 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:522:24: warning: argument 1 null where non-null expected [-Wnonnull] 522 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:530:24: warning: argument 1 null where non-null expected [-Wnonnull] 530 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:537:23: warning: argument 1 null where non-null expected [-Wnonnull] 537 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:542:24: warning: argument 1 null where non-null expected [-Wnonnull] 542 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:552:32: warning: argument 1 null where non-null expected [-Wnonnull] 552 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:555:39: warning: argument 1 null where non-null expected [-Wnonnull] 555 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:560:24: warning: argument 1 null where non-null expected [-Wnonnull] 560 | b=fgetc(f); /*leo el primer char de la segunda fila*/ | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:564:31: warning: argument 1 null where non-null expected [-Wnonnull] 564 | fclose(f); | ~~~~~~^~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ bmn5.cc:571:32: warning: argument 1 null where non-null expected [-Wnonnull] 571 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc: In function ‘void readMatrix(std::string, int, int, int, int**)’: bmn5.cc:595:16: warning: argument 1 null where non-null expected [-Wnonnull] 595 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:598:24: warning: argument 1 null where non-null expected [-Wnonnull] 598 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:604:24: warning: argument 1 null where non-null expected [-Wnonnull] 604 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:612:32: warning: argument 1 null where non-null expected [-Wnonnull] 612 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ bmn5.cc:619:32: warning: argument 1 null where non-null expected [-Wnonnull] 619 | b=fgetc(f); | ~~~~~^~~ /usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’ 575 | extern int fgetc (FILE *__stream) __nonnull ((1)); | ^~~~~ In file included from /usr/include/stdio.h:970: In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29, inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:954: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ bmn5.cc:1232:23: warning: argument 1 null where non-null expected [-Wnonnull] 1232 | fclose(out); | ~~~~~~^~~~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ In function ‘int fprintf(FILE*, const char*, ...)’, inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:111:24: warning: argument 1 null where non-null expected [-Wnonnull] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’: /usr/include/x86_64-linux-gnu/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’ 49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag, | ^~~~~~~~~~~~~ bmn5.cc:1346:23: warning: argument 1 null where non-null expected [-Wnonnull] 1346 | if (bmo==1) fclose(out); | ~~~~~~^~~~~ /usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’ 184 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c identifyModules.cc -o identifyModules.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bipartite.so bmn5.o identifyModules.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9zjXVN/R.INSTALL2c489b3d1b79b2/bipartite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bipartite/00new/bipartite/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bipartite) begin installing package ‘plsRglm’ * installing *source* package ‘mvMORPH’ ... ** this is package ‘mvMORPH’ version ‘1.2.1’ ** package ‘mvMORPH’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpacBYCa/R.INSTALL2c488012db55b8/mvMORPH/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_row.c -o chol_rpf_row.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol_rpf_univ.c -o chol_rpf_univ.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar-matrix-simmap.c -o covar-matrix-simmap.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c givens.c -o givens.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kronecker.c -o kronecker.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvMORPH_init.c -o mvMORPH_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-mat.c -o mvmorph-covar-mat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou-sparse.c -o mvmorph-covar-ou-sparse.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph-covar-ou.c -o mvmorph-covar-ou.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvmorph_ou_mat_rpf.c -o mvmorph_ou_mat_rpf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pic_loglik_mvmorph.c -o pic_loglik_mvmorph.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quadprod.c -o quadprod.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c root2tip.c -o root2tip.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spherical.c -o spherical.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sqrtMat.c -o sqrtMat.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c time_serie_expectation.c -o time_serie_expectation.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weight-matrix-mvmorph.c -o weight-matrix-mvmorph.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvMORPH.so chol_rpf_row.o chol_rpf_univ.o covar-matrix-simmap.o givens.o kronecker.o mvMORPH_init.o mvmorph-covar-mat.o mvmorph-covar-ou-sparse.o mvmorph-covar-ou.o mvmorph_ou_mat_rpf.o pic_loglik_mvmorph.o quadprod.o root2tip.o spherical.o sqrtMat.o time_serie_expectation.o utils.o weight-matrix-mvmorph.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpacBYCa/R.INSTALL2c488012db55b8/mvMORPH/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvMORPH/00new/mvMORPH/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvMORPH) * installing *source* package ‘smerc’ ... ** this is package ‘smerc’ version ‘1.8.4’ ** package ‘smerc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpc2ZYDG/R.INSTALL2c48892a091e04/smerc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_functions.cpp -o distance_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c noc_cpp.cpp -o noc_cpp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optimized_statistics.cpp -o optimized_statistics.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scsg2_cpp.cpp -o scsg2_cpp.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o smerc.so RcppExports.o distance_functions.o noc_cpp.o optimized_statistics.o scsg2_cpp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpc2ZYDG/R.INSTALL2c48892a091e04/smerc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smerc/00new/smerc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smerc) * installing *source* package ‘plsRglm’ ... ** this is package ‘plsRglm’ version ‘1.5.1’ ** package ‘plsRglm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsRglm) * installing *source* package ‘multinet’ ... ** this is package ‘multinet’ version ‘4.2.1’ ** package ‘multinet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ2fF6f/R.INSTALL2c48997a959f19/multinet/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c r_functions.cpp -o r_functions.o r_functions.cpp: In function ‘RMLNetwork growMultiplex(size_t, long int, const Rcpp::GenericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericMatrix&)’: r_functions.cpp:149:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:149:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 149 | if (dependency.nrow()!=num_layers || dependency.ncol()!=num_layers || | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:150:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:150:77: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | pr_internal_event.size()!=num_layers || pr_external_event.size()!=num_layers) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ r_functions.cpp:157:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 157 | for (size_t i=0; i >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1835 | if (vertices.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:1903:26: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 1903 | if (edges.size() != values.size() && values.size()!=1) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp: In function ‘Rcpp::List to_list(const Rcpp::DataFrame&, const RMLNetwork&)’: r_functions.cpp:3290:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3290 | for (size_t i=0; isize()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3377:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3377 | else if (w_inter.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ r_functions.cpp:3398:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3398 | else if (gravity.size()==layers->size()) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from src/community/mlcpm.hpp:22, from r_functions.cpp:12: src/community/mlcpm.ipp: In instantiation of ‘std::unique_ptr > uu::net::mlcpm(const M*, size_t, size_t) [with M = MultilayerNetwork; size_t = long unsigned int]’: r_functions.cpp:3105:28: required from here 3105 | auto com_struct = mlcpm(mnet, k, m); | ~~~~~^~~~~~~~~~~~ src/community/mlcpm.ipp:63:20: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 63 | result->add(std::move(c->to_community())); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/mlcpm.ipp:63:20: note: remove ‘std::move’ call In file included from src/community/modularity.hpp:47, from r_functions.cpp:13: src/community/modularity.ipp: In instantiation of ‘double uu::net::modularity(const M*, const COMM*, double) [with M = MultilayerNetwork; COMM = CommunityStructure]’: r_functions.cpp:3233:31: required from here 3233 | return uu::net::modularity(mnet, communities.get(), omega); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/modularity.ipp:149:15: warning: unused variable ‘actor’ [-Wunused-variable] 149 | for (auto actor: *mnet->actors()) | ^~~~~ In file included from src/community/abacus.ipp:10, from src/community/abacus.hpp:30, from r_functions.cpp:8: src/community/_impl/PillarCommunity.hpp: In instantiation of ‘std::unique_ptr > uu::net::to_vertex_layer_community_structure(const std::set > >&) [with M = MultilayerNetwork]’: src/community/abacus.ipp:36:47: required from ‘std::unique_ptr > uu::net::abacus(const M*, int, int) [with M = MultilayerNetwork]’ 36 | return to_vertex_layer_community_structure(com); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ r_functions.cpp:3161:42: required from here 3161 | auto com_struct = uu::net::abacus(mnet, min_actors, min_layers); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/_impl/PillarCommunity.hpp:99:17: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 99 | res->add(std::move(to_vertex_layer_community(c.get()))); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/community/_impl/PillarCommunity.hpp:99:17: note: remove ‘std::move’ call r_functions.cpp: In function ‘Rcpp::DataFrame getValues(const RMLNetwork&, const std::string&, const Rcpp::DataFrame&, const Rcpp::DataFrame&, const Rcpp::DataFrame&)’: r_functions.cpp:1721:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1721 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1602:36: note: ‘att’ was declared here 1602 | const uu::core::Attribute* att; | ^~~ r_functions.cpp:1588:22: warning: ‘att’ may be used uninitialized [-Wmaybe-uninitialized] 1588 | res[att->name] = vec; | ~~~~~^~~~ r_functions.cpp:1506:36: note: ‘att’ was declared here 1506 | const uu::core::Attribute* att; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_module_definition.cpp -o rcpp_module_definition.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_utils.cpp -o rcpp_utils.o rcpp_utils.cpp: In function ‘std::vector > resolve_const_vertices(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:237:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 237 | for (int i=0; i > resolve_vertices(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:278:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 278 | for (int i=0; i > resolve_const_edges(const uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:322:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 322 | for (int i=0; i > resolve_edges(uu::net::MultilayerNetwork*, const Rcpp::DataFrame&)’: rcpp_utils.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for (int i=0; i > to_communities(const Rcpp::DataFrame&, const uu::net::MultilayerNetwork*)’: rcpp_utils.cpp:541:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 541 | for (size_t i=0; i::__cast(const std::chrono::duration<_Rep, _Period>&) [with _Rep = long double; _Period = std::ratio<1>; _ToDur = std::chrono::duration; _CF = std::ratio<1>; _CR = long double]’, inlined from ‘constexpr std::chrono::__enable_if_is_duration<_ToDur> std::chrono::duration_cast(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:289:23, inlined from ‘constexpr std::chrono::__enable_if_is_duration<_ToDur> std::chrono::floor(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:390:43, inlined from ‘constexpr std::enable_if_t<((bool)std::__and_, std::__not_ > >::value), _ToDur> std::chrono::round(const duration<_Rep, _Period>&) [with _ToDur = duration; _Rep = long double; _Period = std::ratio<1>]’ at /usr/include/c++/14/bits/chrono.h:435:37, inlined from ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’ at src/core/attributes/date.hpp:8216:36: /usr/include/c++/14/bits/chrono.h:201:27: warning: ‘S’ may be used uninitialized [-Wmaybe-uninitialized] 201 | return _ToDur(static_cast<__to_rep>(__d.count())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/attributes/Time.hpp:18: src/core/attributes/date.hpp: In function ‘std::basic_istream<_CharT, _Traits>& date::from_stream(std::basic_istream<_CharT, _Traits>&, const CharT*, fields&, std::__cxx11::basic_string*, std::chrono::minutes*) [with CharT = char; Traits = std::char_traits; Duration = std::chrono::duration; Alloc = std::allocator]’: src/core/attributes/date.hpp:8214:37: note: ‘S’ was declared here 8214 | long double S; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/AttributeType.cpp -o src/core/attributes/AttributeType.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/attributes/Time.cpp -o src/core/attributes/Time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/core/observers/ObserverStore.cpp -o src/core/observers/ObserverStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/communities.cpp -o src/generation/communities.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/erdos_renyi.cpp -o src/generation/erdos_renyi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/generation/standard_graphs.cpp -o src/generation/standard_graphs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass2/parser.cpp -o src/io/_impl/parser/mlpass2/parser.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass2/actions.hpp:5, from src/io/_impl/parser/mlpass2/parser.hpp:4, from src/io/_impl/parser/mlpass2/parser.cpp:1: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass2/parser.hpp:5: src/io/_impl/parser/mlpass2/grammar.hpp:268:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 268 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:274:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 274 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:276:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 276 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass1/utility_functions.cpp -o src/io/_impl/parser/mlpass1/utility_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/parser/mlpass1/parser.cpp -o src/io/_impl/parser/mlpass1/parser.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass1/actions.hpp:5, from src/io/_impl/parser/mlpass1/parser.hpp:4, from src/io/_impl/parser/mlpass1/parser.cpp:1: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass1/parser.hpp:5: src/io/_impl/parser/mlpass1/grammar.hpp:267:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 267 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:273:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 273 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:275:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 275 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/read_common.cpp -o src/io/_impl/read_common.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/_impl/GraphIOFileSection.cpp -o src/io/_impl/GraphIOFileSection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_network.cpp -o src/io/read_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/write_multilayer_network.cpp -o src/io/write_multilayer_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_probabilistic_network.cpp -o src/io/read_probabilistic_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_weighted_network.cpp -o src/io/read_weighted_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_multilayer_network.cpp -o src/io/read_multilayer_network.o In file included from boost/boost/fusion/support/tag_of.hpp:17, from boost/boost/fusion/support/category_of.hpp:11, from boost/boost/spirit/home/x3/support/traits/container_traits.hpp:12, from boost/boost/spirit/home/x3/auxiliary/any_parser.hpp:15, from boost/boost/spirit/home/x3/auxiliary.hpp:11, from boost/boost/spirit/home/x3.hpp:62, from src/io/_impl/parser/mlpass1/actions.hpp:5, from src/io/_impl/parser/mlpass1/parser.hpp:4, from src/io/read_multilayer_network.cpp:6: boost/boost/mpl/assert.hpp:225:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ boost/boost/mpl/assert.hpp:225:21: note: remove parentheses 225 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 226 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 | ); | ~ | - boost/boost/mpl/assert.hpp:230:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ boost/boost/mpl/assert.hpp:230:21: note: remove parentheses 230 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 231 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | ); | ~ | - In file included from src/io/_impl/parser/mlpass1/parser.hpp:5: src/io/_impl/parser/mlpass1/grammar.hpp:267:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 267 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:273:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 273 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass1/grammar.hpp:275:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 275 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ In file included from src/io/_impl/parser/mlpass2/parser.hpp:5, from src/io/read_multilayer_network.cpp:7: src/io/_impl/parser/mlpass2/grammar.hpp:268:29: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 268 | +(alnum | blank | punct - ',') | ~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:274:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 274 | x3::no_skip[+(alnum | blank | punct - ',' - '"')] | ~~~~~~~~~~~~^~~~~ src/io/_impl/parser/mlpass2/grammar.hpp:276:47: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 276 | x3::no_skip['"' > +(alnum | blank | punct - '"') > '"'] | ~~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/io/read_temporal_network.cpp -o src/io/read_temporal_network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/layout/multiforce.cpp -o src/layout/multiforce.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultilayerNetwork.cpp -o src/networks/MultilayerNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/Network.cpp -o src/networks/Network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/LayerStore.cpp -o src/networks/_impl/stores/LayerStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MLECubeStore.cpp -o src/networks/_impl/stores/MLECubeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/VertexStore.cpp -o src/networks/_impl/stores/VertexStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/SimpleEdgeStore.cpp -o src/networks/_impl/stores/SimpleEdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/MultiEdgeStore.cpp -o src/networks/_impl/stores/MultiEdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/stores/EdgeStore.cpp -o src/networks/_impl/stores/EdgeStore.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/CheckVerticesExistObserver.cpp -o src/networks/_impl/observers/CheckVerticesExistObserver.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/_impl/observers/NoLoopCheckObserver2.cpp -o src/networks/_impl/observers/NoLoopCheckObserver2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/OrderedMultiplexNetwork.cpp -o src/networks/OrderedMultiplexNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/MultiNetwork.cpp -o src/networks/MultiNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/weight.cpp -o src/networks/weight.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/probability.cpp -o src/networks/probability.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/networks/time.cpp -o src/networks/time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Dyad.cpp -o src/objects/Dyad.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Walk.cpp -o src/objects/Walk.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Triad.cpp -o src/objects/Triad.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Path.cpp -o src/objects/Path.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/MLVertex.cpp -o src/objects/MLVertex.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Trail.cpp -o src/objects/Trail.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Vertex.cpp -o src/objects/Vertex.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/objects/Edge.cpp -o src/objects/Edge.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/MECube.cpp -o src/olap/MECube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/indexing.cpp -o src/olap/indexing.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/VCube.cpp -o src/olap/VCube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Indexes.cpp -o src/olap/sel/Indexes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Range.cpp -o src/olap/sel/Range.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/Set.cpp -o src/olap/sel/Set.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/All.cpp -o src/olap/sel/All.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/sel/IndexIterator.cpp -o src/olap/sel/IndexIterator.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/ECube.cpp -o src/olap/ECube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/olap/time.cpp -o src/olap/time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/slice.cpp -o src/operations/slice.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/operations/sample.cpp -o src/operations/sample.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c src/utils/summary.cpp -o src/utils/summary.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Network.cpp -o infomap/infomap/Network.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/FlowNetwork.cpp -o infomap/infomap/FlowNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/Node.cpp -o infomap/infomap/Node.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/TreeData.cpp -o infomap/infomap/TreeData.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapContext.cpp -o infomap/infomap/InfomapContext.o In file included from infomap/infomap/InfomapGreedyTypeSpecialized.h:31, from infomap/infomap/InfomapContext.cpp:30: infomap/infomap/InfomapGreedyCommon.h:1022: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1022 | #pragma omp parallel for schedule(dynamic) // Use dynamic scheduling as some threads could end early infomap/infomap/InfomapGreedyCommon.h:1184: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1184 | #pragma omp critical (moveUpdate) g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/NetworkAdapter.cpp -o infomap/infomap/NetworkAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MultiplexNetwork.cpp -o infomap/infomap/MultiplexNetwork.o infomap/infomap/MultiplexNetwork.cpp: In member function ‘std::map::const_iterator* infomap::MultiplexNetwork::getUndirLinkItPtr(std::vector >, std::_Rb_tree_const_iterator > > >&)’: infomap/infomap/MultiplexNetwork.cpp:1090:12: warning: ‘linkIt’ may be used uninitialized [-Wmaybe-uninitialized] 1090 | return linkIt; | ^~~~~~ infomap/infomap/MultiplexNetwork.cpp:1068:35: note: ‘linkIt’ was declared here 1068 | IntraLinkMap::const_iterator *linkIt; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemoryNetworkAdapter.cpp -o infomap/infomap/MemoryNetworkAdapter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemNetwork.cpp -o infomap/infomap/MemNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/MemFlowNetwork.cpp -o infomap/infomap/MemFlowNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/infomap/InfomapBase.cpp -o infomap/infomap/InfomapBase.o infomap/infomap/InfomapBase.cpp:1946: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1946 | #pragma omp parallel for schedule(dynamic) g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/HierarchicalNetwork.cpp -o infomap/io/HierarchicalNetwork.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/TreeDataWriter.cpp -o infomap/io/TreeDataWriter.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/BipartiteClusterReader.cpp -o infomap/io/BipartiteClusterReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/version.cpp -o infomap/io/version.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ClusterReader.cpp -o infomap/io/ClusterReader.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/io/ProgramInterface.cpp -o infomap/io/ProgramInterface.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/FileURI.cpp -o infomap/utils/FileURI.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Isrc -Ilibs -Iboost -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -Iinfomap -fpic -g -O2 -Wall -pedantic -mtune=native -c infomap/utils/Logger.cpp -o infomap/utils/Logger.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/apriori/src/istree.c -o eclat/apriori/src/istree.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/eclat/src/eclat.c -o eclat/eclat/src/eclat.o eclat/eclat/src/eclat.c: In function ‘rec_odcm’: eclat/eclat/src/eclat.c:3485:30: warning: ‘r’ may be used uninitialized [-Wmaybe-uninitialized] 3485 | return (r < 0) ? (SUPP)r : max; /* return error status/max. support */ | ~~~~~~~~~~~~~~~~~~^~~~~ eclat/eclat/src/eclat.c:3365:16: note: ‘r’ was declared here 3365 | int r; /* error status */ | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/chi2.c -o eclat/math/src/chi2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/gamma.c -o eclat/math/src/gamma.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/math/src/ruleval.c -o eclat/math/src/ruleval.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/report.c -o eclat/tract/src/report.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/tract.c -o eclat/tract/src/tract.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/patspec.c -o eclat/tract/src/patspec.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/fim16.c -o eclat/tract/src/fim16.o eclat/tract/src/fim16.c: In function ‘rec_pos’: eclat/tract/src/fim16.c:795:5: warning: ‘memset’ used with length equal to number of elements without multiplication by element size [-Wmemset-elt-size] 795 | memset(fim->supps, 0, 4*sizeof(SUPP)); /* support and lists */ | ^~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/tract/src/clomax.c -o eclat/tract/src/clomax.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/scanner.c -o eclat/util/src/scanner.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/arrays.c -o eclat/util/src/arrays.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/escape.c -o eclat/util/src/escape.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/memsys.c -o eclat/util/src/memsys.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/tabread.c -o eclat/util/src/tabread.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/tabwrite.c -o eclat/util/src/tabwrite.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DCRAN -DNS_INFOMAP -DONLY_C_LOCALE=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ieclat/eclat/src -Ieclat/tract/src -Ieclat/math/src -Ieclat/util/src -Ieclat/apriori/src -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eclat/util/src/symtab.c -o eclat/util/src/symtab.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o multinet.so RcppExports.o init.o r_functions.o rcpp_module_definition.o rcpp_utils.o src/community/_impl/common.o src/community/_impl/glouvain2_utils.o src/community/_impl/MetaNetwork.o src/community/_impl/GMetaNetwork.o src/community/_impl/louvain_utils.o src/community/optimize_slices.o src/core/objects/Object.o src/core/utils/random.o src/core/utils/NameIterator.o src/core/utils/string.o src/core/utils/CSVReader.o src/core/utils/vector.o src/core/exceptions/NullPtrException.o src/core/exceptions/FileNotFoundException.o src/core/exceptions/assert_not_null.o src/core/exceptions/DuplicateElementException.o src/core/exceptions/ExternalLibException.o src/core/exceptions/ElementNotFoundException.o src/core/exceptions/OutOfBoundsException.o src/core/exceptions/OperationNotSupportedException.o src/core/exceptions/WrongParameterException.o src/core/exceptions/WrongFormatException.o src/core/attributes/Text.o src/core/attributes/Attribute.o src/core/attributes/conversion.o src/core/attributes/AttributeType.o src/core/attributes/Time.o src/core/observers/ObserverStore.o src/generation/communities.o src/generation/erdos_renyi.o src/generation/standard_graphs.o src/io/_impl/parser/mlpass2/parser.o src/io/_impl/parser/mlpass1/utility_functions.o src/io/_impl/parser/mlpass1/parser.o src/io/_impl/read_common.o src/io/_impl/GraphIOFileSection.o src/io/read_network.o src/io/write_multilayer_network.o src/io/read_probabilistic_network.o src/io/read_weighted_network.o src/io/read_multilayer_network.o src/io/read_temporal_network.o src/layout/multiforce.o src/networks/MultilayerNetwork.o src/networks/Network.o src/networks/_impl/stores/LayerStore.o src/networks/_impl/stores/MLECubeStore.o src/networks/_impl/stores/VertexStore.o src/networks/_impl/stores/SimpleEdgeStore.o src/networks/_impl/stores/MultiEdgeStore.o src/networks/_impl/stores/EdgeStore.o src/networks/_impl/observers/CheckVerticesExistObserver.o src/networks/_impl/observers/NoLoopCheckObserver2.o src/networks/OrderedMultiplexNetwork.o src/networks/MultiNetwork.o src/networks/weight.o src/networks/probability.o src/networks/time.o src/objects/Dyad.o src/objects/Walk.o src/objects/Triad.o src/objects/Path.o src/objects/MLVertex.o src/objects/Trail.o src/objects/Vertex.o src/objects/Edge.o src/olap/MECube.o src/olap/indexing.o src/olap/VCube.o src/olap/sel/Indexes.o src/olap/sel/Range.o src/olap/sel/Set.o src/olap/sel/All.o src/olap/sel/IndexIterator.o src/olap/ECube.o src/olap/time.o src/operations/slice.o src/operations/sample.o src/utils/summary.o infomap/infomap/Network.o infomap/infomap/FlowNetwork.o infomap/infomap/Node.o infomap/infomap/TreeData.o infomap/infomap/InfomapContext.o infomap/infomap/NetworkAdapter.o infomap/infomap/MultiplexNetwork.o infomap/infomap/MemoryNetworkAdapter.o infomap/infomap/MemNetwork.o infomap/infomap/MemFlowNetwork.o infomap/infomap/InfomapBase.o infomap/io/HierarchicalNetwork.o infomap/io/TreeDataWriter.o infomap/io/BipartiteClusterReader.o infomap/io/version.o infomap/io/ClusterReader.o infomap/io/ProgramInterface.o infomap/utils/FileURI.o infomap/utils/Logger.o eclat/apriori/src/istree.o eclat/eclat/src/eclat.o eclat/math/src/chi2.o eclat/math/src/gamma.o eclat/math/src/ruleval.o eclat/tract/src/report.o eclat/tract/src/tract.o eclat/tract/src/patspec.o eclat/tract/src/fim16.o eclat/tract/src/clomax.o eclat/util/src/scanner.o eclat/util/src/arrays.o eclat/util/src/escape.o eclat/util/src/memsys.o eclat/util/src/tabread.o eclat/util/src/tabwrite.o eclat/util/src/symtab.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ2fF6f/R.INSTALL2c48997a959f19/multinet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-multinet/00new/multinet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multinet) checking bipartite_2.21.tar.gz ... checking bioregion_1.2.0.tar.gz ... checking bootPLS_1.0.1.tar.gz ... checking cassandRa_0.2.0.tar.gz ... checking econetwork_0.7.0.tar.gz ... checking econullnetr_0.2.1.tar.gz ... checking NIMAA_0.2.1.tar.gz ... checking nos_2.0.0.tar.gz ... checking PhageCocktail_1.0.3.tar.gz ... checking plsRglm_1.5.1.tar.gz ... checking RPANDA_2.4.tar.gz ... checking tapnet_0.3.tar.gz ... checking bipartiteD3_0.3.2.tar.gz ... checking HiveR_0.4.0.tar.gz ... checking leiden_0.4.3.1.tar.gz ... checking plsRbeta_0.3.0.tar.gz ... checking primer_1.2.0.tar.gz ... Depends: Package: bipartite Depends: R(>= 3.5.0), sna, vegan Imports: corpcor, fields, igraph, MASS, methods, permute Timings: user system elapsed bipartite 136.809 9.072 150.745 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 6 10 Check results summary: bipartite ... OK rdepends_bioregion ... OK rdepends_bipartiteD3 ... OK rdepends_bootPLS ... OK rdepends_cassandRa ... OK rdepends_econetwork ... OK rdepends_econullnetr ... OK rdepends_HiveR ... OK rdepends_leiden ... OK rdepends_NIMAA ... NOTE * checking Rd cross-references ... NOTE rdepends_nos ... OK rdepends_PhageCocktail ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_plsRbeta ... NOTE * checking Rd cross-references ... NOTE rdepends_plsRglm ... NOTE * checking Rd cross-references ... NOTE * checking for unstated dependencies in ‘demo’ ... NOTE rdepends_primer ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_RPANDA ... OK rdepends_tapnet ... NOTE * checking Rd files ... [0s/0s] NOTE