* using log directory 'd:/RCompile/CRANincoming/R-devel/biogrowth.Rcheck'
* using R Under development (unstable) (2024-11-07 r87302 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'biogrowth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'biogrowth' version '1.0.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [15s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'biogrowth' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... WARNING
Found the following file with non-ASCII characters:
  R/metainfo_secondary.R
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function 'tools::showNonASCIIfile' can help in finding non-ASCII
characters in files.
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DynamicGrowth.Rd: geom_line
  FitDynamicGrowth.Rd: geom_line, geom_point
  FitDynamicGrowthMCMC.Rd: geom_line, geom_point
  FitIsoGrowth.Rd: modFit, geom_line, geom_point
  FitMultipleDynamicGrowth.Rd: geom_line
  FitMultipleGrowthMCMC.Rd: geom_line
  FitSecondaryGrowth.Rd: modFit
  GlobalGrowthFit.Rd: geom_line
  GrowthFit.Rd: geom_line, geom_point
  GrowthPrediction.Rd: geom_line
  GrowthUncertainty.Rd: geom_line, geom_ribbon
  IsothermalGrowth.Rd: geom_line
  StochasticGrowth.Rd: geom_line, geom_ribbon
  TimeDistribution.Rd: geom_histogram
  check_growth_guess.Rd: ggplot
  dBaranyi.Rd: ode
  fit_growth.Rd: modFit, modMCMC
  fit_isothermal_growth.Rd: modFit
  fit_multiple_growth.Rd: modFit
  fit_multiple_growth_MCMC.Rd: modMCMC
  fit_secondary_growth.Rd: modFit
  get_dyna_residuals.Rd: modFit, modCost
  get_multi_dyna_residuals.Rd: modFit
  predict_dynamic_growth.Rd: ode
  predict_growth.Rd: ode
  show_guess_dynamic.Rd: ggplot
  show_guess_primary.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [19s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [266s] OK
* checking PDF version of manual ... [25s] OK
* checking HTML version of manual ... [18s] OK
* DONE
Status: 1 WARNING, 1 NOTE