* using log directory ‘/srv/hornik/tmp/CRAN_pretest/biogrowth.Rcheck’
* using R Under development (unstable) (2024-11-07 r87302)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘biogrowth/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘biogrowth’ version ‘1.0.5’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘biogrowth’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... WARNING
Found the following file with non-ASCII characters:
  R/metainfo_secondary.R
Portable packages must use only ASCII characters in their R code and
NAMESPACE directives, except perhaps in comments.
Use \uxxxx escapes for other characters.
Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII
characters in files.
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  DynamicGrowth.Rd: geom_line
  FitDynamicGrowth.Rd: geom_line, geom_point
  FitDynamicGrowthMCMC.Rd: geom_line, geom_point
  FitIsoGrowth.Rd: modFit, geom_line, geom_point
  FitMultipleDynamicGrowth.Rd: geom_line
  FitMultipleGrowthMCMC.Rd: geom_line
  FitSecondaryGrowth.Rd: modFit
  GlobalGrowthFit.Rd: geom_line
  GrowthFit.Rd: geom_line, geom_point
  GrowthPrediction.Rd: geom_line
  GrowthUncertainty.Rd: geom_line, geom_ribbon
  IsothermalGrowth.Rd: geom_line
  StochasticGrowth.Rd: geom_line, geom_ribbon
  TimeDistribution.Rd: geom_histogram
  check_growth_guess.Rd: ggplot
  dBaranyi.Rd: ode
  fit_growth.Rd: modFit, modMCMC
  fit_isothermal_growth.Rd: modFit
  fit_multiple_growth.Rd: modFit
  fit_multiple_growth_MCMC.Rd: modMCMC
  fit_secondary_growth.Rd: modFit
  get_dyna_residuals.Rd: modFit, modCost
  get_multi_dyna_residuals.Rd: modFit
  predict_dynamic_growth.Rd: ode
  predict_growth.Rd: ode
  show_guess_dynamic.Rd: ggplot
  show_guess_primary.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [154s/154s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 1 NOTE