* using log directory ‘/srv/hornik/tmp/CRAN/bioRad.Rcheck’
* using R Under development (unstable) (2023-07-07 r84658)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (3)
    GNU Fortran (Debian 12.3.0-4) 12.3.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘bioRad/DESCRIPTION’ ... OK
* this is package ‘bioRad’ version ‘0.7.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/8s] NOTE
Maintainer: ‘Adriaan M. Dokter <amd427@cornell.edu>’

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-07-07 as issues were not corrected
    in time.

Found the following (possibly) invalid URLs:
  URL: https://adokter.github.io/bioRad/articles/bioRad.html (moved to https://adriaandokter.com/bioRad/articles/bioRad.html)
    From: man/bioRad-package.Rd
    Status: 301
    Message: Moved Permanently
  URL: https://adokter.github.io/bioRad/reference/index.html (moved to https://adriaandokter.com/bioRad/reference/index.html)
    From: man/bioRad-package.Rd
    Status: 301
    Message: Moved Permanently
  URL: https://www.rstudio.com/ (moved to https://posit.co/)
    From: inst/doc/rad_aero_22.html
    Status: 301
    Message: Moved Permanently
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bioRad’ can be installed ... [5s/5s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [36s/37s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
integrate_to_ppi 5.363  0.164   5.527
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [76s/78s] OK
  Running ‘testthat.R’ [75s/78s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [32s/32s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs