* using log directory 'd:/RCompile/CRANincoming/R-devel/bioRad.Rcheck'
* using R Under development (unstable) (2023-07-07 r84657 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'bioRad/DESCRIPTION' ... OK
* this is package 'bioRad' version '0.7.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Adriaan M. Dokter <amd427@cornell.edu>'

New submission

Package was archived on CRAN

Unknown, possibly misspelled, fields in DESCRIPTION:
  'Remotes'

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-07-07 as issues were not corrected
    in time.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid URLs:
  URL: https://adokter.github.io/bioRad/articles/bioRad.html (moved to https://adriaandokter.com/bioRad/articles/bioRad.html)
    From: man/bioRad-package.Rd
    Status: 301
    Message: Moved Permanently
  URL: https://adokter.github.io/bioRad/reference/index.html (moved to https://adriaandokter.com/bioRad/reference/index.html)
    From: man/bioRad-package.Rd
    Status: 301
    Message: Moved Permanently
  URL: https://www.rstudio.com/ (moved to https://posit.co/)
    From: inst/doc/rad_aero_22.html
    Status: 301
    Message: Moved Permanently
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bioRad' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [98s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                  user system elapsed
integrate_to_ppi 24.03   1.38   25.44
composite_ppi    10.14   0.45   10.59
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [137s] ERROR
  Running 'testthat.R' [137s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(bioRad)
  Welcome to bioRad version 0.7.0
  using vol2birdR version 1.0.1 (MistNet not installed)
  > 
  > test_check("bioRad")
  The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
  which was just loaded, will retire in October 2023.
  Please refer to R-spatial evolution reports for details, especially
  https://r-spatial.org/r/2023/05/15/evolution4.html.
  It may be desirable to make the sf package available;
  package maintainers should consider adding sf to Suggests:.
  The sp package is now running under evolution status 2
       (status 2 uses the sf package in place of rgdal)
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  Running vol2birdSetUp
  Warning: radial velocities will be dealiased...
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  pj_obj_create: Cannot find proj.db
  Running vol2birdSetUp
  Warning: radial velocities will be dealiased...
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/hdf5/czbrd/2023/06/01/czbrd_vp_20230601T000000Z_0xb.h5
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/hdf5/czbrd/2023/06/01/czbrd_vp_20230601T000500Z_0xb.h5
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/hdf5/czbrd/2023/06/01/czbrd_vp_20230601T001000Z_0xb.h5
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202303.csv.gz
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/monthly/bejab/2023/bejab_vpts_202304.csv.gz
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/monthly/bewid/2023/bewid_vpts_202303.csv.gz
  No extension detected; assuming file type .txt which maps to stdout format
  Downloading https://aloft.s3-eu-west-1.amazonaws.com/baltrad/hdf5/eehar/2023/06/01/eehar_vp_20230601T001000Z_0xb.h5
                 Vertical profile (class vp)
  
         radar:  seang 
        source:  WMO:02606,RAD:SE50,PLC:Angelholm,NOD:seang,ORG:82,CTY:643,CMT:Swedish radar 
  nominal time:  2015-10-18 18:00:00 
  generated by:  vol2bird 0.3.17 
  projecting on 300 seconds interval grid...
  
                     Irregular time series of vertical profiles (class vpts)
  
             radar:  KBGM 
        # profiles:  1934 
  time range (UTC):  2016-09-01 00:02:00 - 2016-09-10 11:56:00 
     time step (s):  min: 180     max:  16320 
                     Irregular time series of vertical profiles (class vpts)
  
             radar:  KBGM 
        # profiles:  1934 
  time range (UTC):  2016-09-01 00:02:00 - 2016-09-10 11:56:00 
     time step (s):  min: 180     max:  16320 
  [ FAIL 1 | WARN 20 | SKIP 31 | PASS 1054 ]
  
  ══ Skipped tests (31) ══════════════════════════════════════════════════════════
  • No MistNet (1): 'test-calculate_vp.R:282:3'
  • On CRAN (21): 'test-apply_mistnet.R:1:1', 'test-download_pvolfiles.R:9:3',
    'test-download_pvolfiles.R:110:3', 'test-download_pvolfiles.R:134:3',
    'test-download_vpfiles.R:8:3', 'test-list_vpts_aloft.R:28:3',
    'test-list_vpts_aloft.R:41:3', 'test-list_vpts_aloft.R:53:3',
    'test-list_vpts_aloft.R:64:3', 'test-list_vpts_aloft.R:88:3',
    'test-list_vpts_aloft.R:106:3', 'test-list_vpts_aloft.R:119:3',
    'test-list_vpts_aloft.R:133:3', 'test-list_vpts_aloft.R:156:3',
    'test-list_vpts_aloft.R:177:3', 'test-map.R:2:3', 'test-pvol.R:10:3',
    'test-read_vpts.R:128:3', 'test-read_vpts.R:146:3', 'test-read_vpts.R:162:3',
    'test-read_vpts.R:182:3'
  • empty test (9): 'test-dbz_eta.R:1:1', 'test-dbz_eta.R:13:1',
    'test-iris.R:1:1', 'test-nexrad_odim.R:1:1', 'test-nyquist_velocity.R:1:1',
    'test-read_vpfiles.R:1:1', 'test-select_vpfiles.R:1:1',
    'test-sunrise_sunset.R:1:1', 'test-sunrise_sunset.R:5:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-read_cajun.R:11:3'): read_cajun() returns error on incorrect parameters ──
  Error in `read_cajun(empty_file_path)`: File D:\temp\RtmpoxLq00\filebff47cbfde0 is empty.
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at test-read_cajun.R:11:2
   2. │ └─testthat:::expect_condition_matching(...)
   3. │   └─testthat:::quasi_capture(...)
   4. │     ├─testthat (local) .capture(...)
   5. │     │ └─base::withCallingHandlers(...)
   6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   7. └─bioRad::read_cajun(empty_file_path)
  
  [ FAIL 1 | WARN 20 | SKIP 31 | PASS 1054 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [40s] OK
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [15s] OK
* DONE
Status: 1 ERROR, 2 NOTEs