context("Testing get.pdb()") test_that("get.pdb() works properly", { skip_on_cran() skip_on_travis() ids <- c("1tag", "1tnd") # Gt tmp <- tempdir() suppressWarnings( capture.output(files <- get.pdb(ids, tmp, verbose=FALSE)) ) expect_identical(files, paste(tmp, "/", ids, ".pdb", sep="")) expect_warning(get.pdb("3c7kxxx", tmp, verbose=FALSE)) expect_warning(get.pdb("1tag", tmp, verbose=FALSE)) suppressWarnings( capture.output(files <- get.pdb("1as0", tmp, verbose=FALSE, gzip=TRUE)) ) expect_identical(files, paste(tmp, "/1as0.pdb", sep="")) # expect_error(get.pdb("aaaa", tmp, verbose=FALSE)) }) test_that("get.pdb() with ncore>1 works properly", { skip_on_cran() skip_on_travis() ids <- c("1tag", "1tnd", "3v00", "1got") tmp1 <- paste(tempdir(), "1", sep="") tmp2 <- paste(tempdir(), "2", sep="") time1 <- system.time(r1 <- get.pdb(ids, tmp1, ncore=1, verbose=FALSE))["elapsed"] time2 <- system.time(r2 <- get.pdb(ids, tmp2, ncore=NULL, verbose=FALSE))["elapsed"] expect_identical(r2, paste(tmp2, "/", ids, ".pdb", sep="")) expect_identical(list.files(tmp1), list.files(tmp2)) # cat("Speed up by ", round((time1-time2)/time2*100, 1), "%", sep="") # if(getOption("cores") > 1) # expect_true(time1 > time2) unlink(tmp1, recursive=TRUE) unlink(tmp2, recursive=TRUE) })