* installing *source* package ‘bigstatsr’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c AUC.cpp -o AUC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c FBM-extract.cpp -o FBM-extract.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c FBM-replace.cpp -o FBM-replace.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c FBM-xptr.cpp -o FBM-xptr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c arma-prod-self-sub.cpp -o arma-prod-self-sub.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c arma-prod-sub.cpp -o arma-prod-sub.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c arma-prod.cpp -o arma-prod.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c biglassoLin.cpp -o biglassoLin.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c biglassoLog.cpp -o biglassoLog.o In file included from biglassoLog.cpp:4: ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = RawSubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 212 | violations = COPY_check_strong_set( | ~~~~~~~~~~~~~~~~~~~~~^ 213 | in_A, in_S, z, macc, center, scale, pf, beta_old, l1, l2, s, sum_s); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ In file included from ../inst/include/bigstatsr/biglasso/logistic.hpp:18: In function ‘std::size_t bigstatsr::biglassoLog::bigstatsr::biglassoUtils::COPY_check_strong_set(Rcpp::LogicalVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, double, double, const Rcpp::NumericVector&, double) [with C = SubMatCovAcc]’, inlined from ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’ at ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: ../inst/include/bigstatsr/biglasso/utils.hpp:116:33: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 116 | z[j] = (cpsum - center[j] * sumResid) / (scale[j] * n); ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ In function ‘std::size_t bigstatsr::biglassoLog::bigstatsr::biglassoUtils::COPY_check_strong_set(Rcpp::LogicalVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, double, double, const Rcpp::NumericVector&, double) [with C = SubMatCovAcc]’, inlined from ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’ at ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: ../inst/include/bigstatsr/biglasso/utils.hpp:116:33: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 116 | z[j] = (cpsum - center[j] * sumResid) / (scale[j] * n); ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ In function ‘std::size_t bigstatsr::biglassoLog::bigstatsr::biglassoUtils::COPY_check_strong_set(Rcpp::LogicalVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, double, double, const Rcpp::NumericVector&, double) [with C = SubMatCovAcc]’, inlined from ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’ at ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: ../inst/include/bigstatsr/biglasso/utils.hpp:116:33: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 116 | z[j] = (cpsum - center[j] * sumResid) / (scale[j] * n); ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ In function ‘std::size_t bigstatsr::biglassoLog::bigstatsr::biglassoUtils::COPY_check_strong_set(Rcpp::LogicalVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, double, double, const Rcpp::NumericVector&, double) [with C = SubMatCovAcc]’, inlined from ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’ at ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: ../inst/include/bigstatsr/biglasso/utils.hpp:116:33: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 116 | z[j] = (cpsum - center[j] * sumResid) / (scale[j] * n); ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ In function ‘std::size_t bigstatsr::biglassoLog::bigstatsr::biglassoUtils::COPY_check_strong_set(Rcpp::LogicalVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, double, double, const Rcpp::NumericVector&, double) [with C = SubMatCovAcc]’, inlined from ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’ at ../inst/include/bigstatsr/biglasso/logistic.hpp:212:41: ../inst/include/bigstatsr/biglasso/utils.hpp:116:33: warning: ‘sum_s’ may be used uninitialized [-Wmaybe-uninitialized] 116 | z[j] = (cpsum - center[j] * sumResid) / (scale[j] * n); ../inst/include/bigstatsr/biglasso/logistic.hpp: In function ‘Rcpp::List bigstatsr::biglassoLog::COPY_cdfit_binomial_hsr(C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, Rcpp::NumericVector&, double, double, int, int, C, const Rcpp::NumericVector&, const Rcpp::NumericVector&, int, int) [with C = SubMatCovAcc]’: ../inst/include/bigstatsr/biglasso/logistic.hpp:76:21: note: ‘sum_s’ was declared here 76 | double sumWResid, sum_s, sum_wx_sq, sum_wx, sum_w, x, xw; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c biglassoUtils.cpp -o biglassoUtils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c colstats.cpp -o colstats.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c counts.cpp -o counts.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c errorMsgs.cpp -o errorMsgs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c prodMatVec.cpp -o prodMatVec.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c transpose.cpp -o transpose.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c univRegLin5.cpp -o univRegLin5.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c univRegLog.cpp -o univRegLog.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rmio/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utils-mat.cpp -o utils-mat.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bigstatsr.so AUC.o FBM-extract.o FBM-replace.o FBM-xptr.o RcppExports.o arma-prod-self-sub.o arma-prod-sub.o arma-prod.o biglassoLin.o biglassoLog.o biglassoUtils.o colstats.o counts.o errorMsgs.o prodMatVec.o transpose.o univRegLin5.o univRegLog.o utils-mat.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing to /home/hornik/tmp/CRAN_recheck/bigstatsr.Rcheck/00LOCK-bigstatsr/00new/bigstatsr/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘typeof’ from package ‘base’ in package ‘bigstatsr’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘bigstatsr’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigstatsr)