################################################################################ test_that("can use SFBMs from old versions", { spmat <- Matrix::sparseMatrix(1, 2, x = 3, dims = c(3, 3)) test_file <- test_path("testdata/old_sfbm.rds") X <- readRDS(test_file) X$backingfile <- sub("\\.rds$", ".sbk", test_file) expect_identical(X[], spmat) }) ################################################################################ test_that("sparse matrix accessors work", { spmat <- Matrix::Diagonal(5, c(1, 0:3)) spmat[4, 3] <- 5 spmat[1, 4] <- 6 spmat[3, 4] <- 7 list_ind_row <- list_ind_col <- list(2, 1:5, c(TRUE, FALSE, TRUE, FALSE, TRUE), -3, -(3:5), sample(5, replace = TRUE)) for (compact in c(TRUE, FALSE)) { X <- as_SFBM(spmat, compact = compact) for (ind_row in list_ind_row) { for (ind_col in list_ind_col) { expect_identical(X[ind_row, ind_col], spmat[ind_row, ind_col, drop = FALSE]) expect_error(X[ind_row, ind_col, drop = FALSE], "not implemented") } } expect_identical(X[], spmat) expect_identical(X[,], spmat) } spmat2 <- Matrix::rsparsematrix(5, 5, density = 0.5, symmetric = TRUE) diag(spmat2) <- max(abs(spmat2)); spmat3 <- Matrix::cov2cor(spmat2) X2 <- as_SFBM_corr_compact(spmat3) for (ind_row in list_ind_row) { for (ind_col in list_ind_col) { expect_lt(max(abs(X2[ind_row, ind_col] - spmat3[ind_row, ind_col, drop = FALSE])), 1 / 32767) expect_error(X[ind_row, ind_col, drop = FALSE], "not implemented") } } }) ################################################################################ test_that("dense matrix accessors work", { spmat <- Matrix::Diagonal(5, c(1, 0:3)) spmat[4, 3] <- 5 spmat[1, 4] <- 6 spmat[3, 4] <- 7 list_ind_row <- list_ind_col <- list(2, 1:5, sample(5, replace = TRUE)) for (compact in c(TRUE, FALSE)) { X <- as_SFBM(spmat, compact = compact) for (ind_row in list_ind_row) { for (ind_col in list_ind_col) { expect_identical(X$dense_acc(ind_row, ind_col), as.matrix(spmat[ind_row, ind_col, drop = FALSE])) } } } spmat2 <- Matrix::rsparsematrix(10, 10, density = 0.5, symmetric = TRUE) diag(spmat2) <- 10 X2 <- as_SFBM_corr_compact(Matrix::cov2cor(spmat2)) for (ind_row in list_ind_row) { for (ind_col in list_ind_col) { expect_identical(X2$dense_acc(ind_row, ind_col), as.matrix(X2[ind_row, ind_col])) } } }) ################################################################################