* installing *source* package ‘bigmemory’ ... ** this is package ‘bigmemory’ version ‘4.6.6’ ** using staged installation checking for Sun Studio compiler... no checking for OS... Linux ** libs using C++ compiler: ‘aarch64-linux-gnu-g++ (Ubuntu 15.2.0-16ubuntu1) 15.2.0’ aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c BigMatrix.cpp -o BigMatrix.o In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, from ../inst/include/bigmemory/BigMatrix.h:10, from BigMatrix.cpp:22: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:23: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c RcppExports.cpp -o RcppExports.o aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c SharedCounter.cpp -o SharedCounter.o aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c bigmemory.cpp -o bigmemory.o In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, from ../inst/include/bigmemory/BigMatrix.h:10, from bigmemory.cpp:7: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:23: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/c++/15/bits/stl_algobase.h:64, from /usr/include/c++/15/string:53, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/fstream:42, from bigmemory.cpp:2: /usr/include/c++/15/bits/stl_pair.h: In instantiation of ‘constexpr std::pair::type>::__type, typename std::__strip_reference_wrapper::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double; _T2 = double&; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper::type>::__type = double; typename decay<_Tp2>::type = double]’: bigmemory.cpp:1124:41: required from ‘SEXPREC* get_order(MatrixAccessorType, SEXP, SEXP, SEXP) [with RType = double; MatrixAccessorType = MatrixAccessor; SEXP = SEXPREC*]’ 1124 | ov.push_back( std::make_pair( static_cast(i), val) ); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigmemory.cpp:1473:27: required from here 1473 | return get_order( | ~~~~~~~~~~~~~~~~~^ 1474 | MatrixAccessor(REAL(matrixVector), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1475 | static_cast(Rf_asInteger(nrow))), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1476 | columns, naLast, decreasing ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_pair.h:1164:5: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 1164 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c deepcopy.cpp -o deepcopy.o In file included from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/local/lib/R/site-library/BH/include/boost/shared_ptr.hpp:17, from ../inst/include/bigmemory/BigMatrix.h:10, from deepcopy.cpp:10: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:294:33: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | explicit shared_count( std::auto_ptr & r ): pi_( new sp_counted_impl_p( r.get() ) ) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27, from /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:23: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 354 | explicit shared_ptr( std::auto_ptr & r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | shared_ptr( std::auto_ptr && r ): px(r.get()), pn() | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 423 | shared_ptr & operator=( std::auto_ptr & r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 430 | shared_ptr & operator=( std::auto_ptr && r ) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr& boost::shared_ptr::operator=(std::auto_ptr<_Up>&&)’: /usr/local/lib/R/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 432 | this_type( static_cast< std::auto_ptr && >( r ) ).swap( *this ); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ aarch64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -DLINUX -fsigned-char -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/uuid/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-monHqu/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-monHqu/r-base-4.6.0=/usr/src/r-base-4.6.0-4.2604.0 -Wdate-time -D_FORTIFY_SOURCE=3 -c util.cpp -o util.o aarch64-linux-gnu-g++ -std=gnu++20 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,--package-metadata=%7B%22type%22:%22deb%22%2C%22os%22:%22ubuntu%22%2C%22name%22:%22r-base%22%2C%22version%22:%224.6.0-4.2604.0%22%2C%22architecture%22:%22arm64%22%7D -flto=auto -ffat-lto-objects -Wl,-z,relro -o bigmemory.so BigMatrix.o RcppExports.o SharedCounter.o bigmemory.o deepcopy.o util.o -lrt -lm -L/usr/lib/R/lib -lR installing to /__w/linux-arm64-checks/linux-arm64-checks/mylib/00LOCK-bigmemory/00new/bigmemory/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘ncol’ from package ‘base’ in package ‘bigmemory’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘bigmemory’ Creating a generic function for ‘typeof’ from package ‘base’ in package ‘bigmemory’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigmemory)