* using log directory ‘/srv/hornik/tmp/CRAN/bigergm.Rcheck’ * using R Under development (unstable) (2024-02-13 r85895) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘bigergm/DESCRIPTION’ ... OK * this is package ‘bigergm’ version ‘1.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Cornelius Fritz ’ New submission Possibly misspelled words in DESCRIPTION: HERGMs (12:125) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bigergm’ can be installed ... [50s/50s] OK * used C++ compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) hergm.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:109: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:110: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:111: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:113: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:114: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:115: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:116: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:117: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:119: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) hergm.Rd:120: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/4s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [35s/35s] ERROR Running ‘testthat.R’ [35s/35s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bigergm) Loading required package: ergm Loading required package: network 'network' 1.18.2 (2023-12-04), part of the Statnet Project * 'news(package="network")' for changes since last version * 'citation("network")' for citation information * 'https://statnet.org' for help, support, and other information 'ergm' 4.6.0 (2023-12-17), part of the Statnet Project * 'news(package="ergm")' for changes since last version * 'citation("ergm")' for citation information * 'https://statnet.org' for help, support, and other information 'ergm' 4 is a major update that introduces some backwards-incompatible changes. Please type 'news(package="ergm")' for a list of major changes. Loading required package: Rcpp > > test_check("bigergm") Compute pi for pi_s0v0w0 [1] 1 Compute pi for pi_s1v0w0 [1] 2 Compute pi for pi_s0v1w0 [1] 3 Compute pi for pi_s1v1w0 [1] 4 Compute pi for pi_s0v0w1 [1] 5 Compute pi for pi_s1v0w1 [1] 6 Compute pi for pi_s0v1w1 [1] 7 Compute pi for pi_s1v1w1 [1] 8 Compute pi for pi_s0v0w0 [1] 1 Compute pi for pi_s1v0w0 [1] 2 Compute pi for pi_s0v1w0 [1] 3 Compute pi for pi_s1v1w0 [1] 4 Compute pi for pi_s0v0w1 [1] 5 Compute pi for pi_s1v0w1 [1] 6 Compute pi for pi_s0v1w1 [1] 7 Compute pi for pi_s1v1w1 [1] 8 Compute pi for pi_s0v0w0 [1] 1 Compute pi for pi_s1v0w0 [1] 2 Compute pi for pi_s0v1w0 [1] 3 Compute pi for pi_s1v1w0 [1] 4 Compute pi for pi_s0v0w1 [1] 5 Compute pi for pi_s1v0w1 [1] 6 Compute pi for pi_s0v1w1 [1] 7 Compute pi for pi_s1v1w1 [1] 8 edges nodematch('x') nodematch('y') triangle kstar(2) -3.00 1.00 1.00 0.76 0.08 edges nodematch('x') nodematch('y') -5 2 2 edges nodematch('x') nodematch('y') triangle kstar(2) -3.00 1.00 1.00 0.76 0.08 edges nodematch('x') nodematch('y') -5 2 2 [ FAIL 3 | WARN 3 | SKIP 2 | PASS 163 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-EM-checkpoint.R:2:3', 'test-cache.R:49:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-simulate_hergm.R:473:3'): Yielding the same between-block network using the cpp function when the seed is fixed works ── all(adj1 == adj2) is not FALSE `actual`: TRUE `expected`: FALSE ── Failure ('test-simulate_hergm.R:474:3'): Yielding the same between-block network using the cpp function when the seed is fixed works ── all(adj1 == adj3) is not FALSE `actual`: TRUE `expected`: FALSE ── Failure ('test-simulate_hergm.R:475:3'): Yielding the same between-block network using the cpp function when the seed is fixed works ── all(adj2 == adj3) is not FALSE `actual`: TRUE `expected`: FALSE [ FAIL 3 | WARN 3 | SKIP 2 | PASS 163 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [33s/33s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs