* installing *source* package ‘bigalgebra’ ... ** this is package ‘bigalgebra’ version ‘3.1.1’ ** using staged installation ** libs using C compiler: ‘Debian clang version 23.1.0 (2)’ using C++ compiler: ‘Debian clang version 23.1.0 (2)’ clang-23 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-lcxx/include" -DNDEBUG -I../include -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/bigmemory/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_bigalgebra.c -o R_init_bigalgebra.o clang++-23 -stdlib=libc++ -std=gnu++20 -I"/home/hornik/tmp/R-d-clang-lcxx/include" -DNDEBUG -I../include -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/bigmemory/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bigalgebra.cpp -o bigalgebra.o In file included from bigalgebra.cpp:35: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__exclude_from_explicit_instantiation__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :249:69: note: expanded from here 249 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :251:8: note: expanded from here 251 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from bigalgebra.cpp:35: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__visibility__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :249:110: note: expanded from here 249 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :251:8: note: expanded from here 251 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ In file included from bigalgebra.cpp:35: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/bigmemory/include/bigmemory/BigMatrix.h:9: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/mapped_region.hpp:25: In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/interprocess_fwd.hpp:25: /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:26:1: warning: unused attribute '__abi_tag__' in '#pragma clang attribute push' region [-Wpragma-clang-attribute] 26 | BOOST_MOVE_STD_NS_BEG | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:21:34: note: expanded from macro 'BOOST_MOVE_STD_NS_BEG' 21 | #define BOOST_MOVE_STD_NS_BEG _LIBCPP_BEGIN_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:74:39: note: expanded from macro '_LIBCPP_BEGIN_NAMESPACE_STD' 74 | # define _LIBCPP_BEGIN_NAMESPACE_STD _LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD inline namespace _LIBCPP_ABI_NAMESPACE { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:70:40: note: expanded from macro '_LIBCPP_BEGIN_UNVERSIONED_NAMESPACE_STD' 70 | _LIBCPP_PUSH_EXTENSION_DIAGNOSTICS _LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS namespace _LIBCPP_NAMESPACE_VISIBILITY std { | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:51:3: note: expanded from macro '_LIBCPP_END_EXPLICIT_ABI_ANNOTATIONS' 51 | _Pragma(_LIBCPP_TOSTRING(clang attribute _LibcxxExplicitABIAnnotations.push( \ | ^ :249:136: note: expanded from here 249 | clang attribute _LibcxxExplicitABIAnnotations.push( __attribute__((__exclude_from_explicit_instantiation__, __visibility__("hidden"), __abi_tag__("nqe230100"))), apply_to = function) | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/interprocess/detail/std_fwd.hpp:54:1: note: '#pragma clang attribute push' regions ends here 54 | BOOST_MOVE_STD_NS_END | ^ /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/move/detail/std_ns_begin.hpp:22:34: note: expanded from macro 'BOOST_MOVE_STD_NS_END' 22 | #define BOOST_MOVE_STD_NS_END _LIBCPP_END_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:75:39: note: expanded from macro '_LIBCPP_END_NAMESPACE_STD' 75 | # define _LIBCPP_END_NAMESPACE_STD } _LIBCPP_END_UNVERSIONED_NAMESPACE_STD | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:72:51: note: expanded from macro '_LIBCPP_END_UNVERSIONED_NAMESPACE_STD' 72 | # define _LIBCPP_END_UNVERSIONED_NAMESPACE_STD } _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _LIBCPP_POP_EXTENSION_DIAGNOSTICS | ^ /usr/lib/llvm-23/bin/../include/c++/v1/__configuration/namespace.h:57:48: note: expanded from macro '_LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS' 57 | #define _LIBCPP_BEGIN_EXPLICIT_ABI_ANNOTATIONS _Pragma("clang attribute _LibcxxExplicitABIAnnotations.pop") | ^ :251:8: note: expanded from here 251 | clang attribute _LibcxxExplicitABIAnnotations.pop | ^ 3 warnings generated. clang++-23 -stdlib=libc++ -std=gnu++20 -shared -L/home/hornik/tmp/R-d-clang-lcxx/lib -Wl,-O1 -o bigalgebra.so R_init_bigalgebra.o bigalgebra.o -llapack -L/home/hornik/tmp/R-d-clang-lcxx/lib -lRblas -L/usr/lib/llvm-23/lib/clang/23/lib/linux -lflang_rt.runtime -lm -L/home/hornik/tmp/R-d-clang-lcxx/lib -lR installing to /home/hornik/tmp/CRAN_special_clang23/bigalgebra.Rcheck/00LOCK-bigalgebra/00new/bigalgebra/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigalgebra)